miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23487 3' -56.4 NC_005259.1 + 57458 0.68 0.640869
Target:  5'- gCGACGcuGCGGCa--GGCCGGUgGCACCg -3'
miRNA:   3'- aGCUGC--CGCUGcaaCUGGCCG-UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 60822 0.68 0.640869
Target:  5'- aUCGuCGGCGAU----GCUGGC-CACCa -3'
miRNA:   3'- -AGCuGCCGCUGcaacUGGCCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 11295 0.68 0.634521
Target:  5'- -gGACGGuCGACGggcgugaggccgaGACgGGCGCGCa -3'
miRNA:   3'- agCUGCC-GCUGCaa-----------CUGgCCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 53626 0.68 0.630289
Target:  5'- gUCGAgCGGUGcCGUUGGCCGcuuccuGCACguuguacggGCCg -3'
miRNA:   3'- -AGCU-GCCGCuGCAACUGGC------CGUG---------UGG- -5'
23487 3' -56.4 NC_005259.1 + 27546 0.68 0.630289
Target:  5'- aCGGCGG-GAUGUUG--CGGC-CACCg -3'
miRNA:   3'- aGCUGCCgCUGCAACugGCCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 4343 0.68 0.61971
Target:  5'- cUCGucGCGGUGAUGagcgccgGA-CGGCACGCCc -3'
miRNA:   3'- -AGC--UGCCGCUGCaa-----CUgGCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 17745 0.68 0.61971
Target:  5'- cUCGAC-GCGAucCGUgaGGCCGccGCGCGCCg -3'
miRNA:   3'- -AGCUGcCGCU--GCAa-CUGGC--CGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 43416 0.68 0.61971
Target:  5'- cUCGGCGGCGGuuuccuCGcucGACUGGCuGCGCUc -3'
miRNA:   3'- -AGCUGCCGCU------GCaa-CUGGCCG-UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 11775 0.68 0.60914
Target:  5'- cUCGACGGCGAgGgaGuCCcacacaucgGGCGCgACCc -3'
miRNA:   3'- -AGCUGCCGCUgCaaCuGG---------CCGUG-UGG- -5'
23487 3' -56.4 NC_005259.1 + 51101 0.68 0.60914
Target:  5'- aCGAgGGCGGgaucUGuCCGGCAgGCCa -3'
miRNA:   3'- aGCUgCCGCUgca-ACuGGCCGUgUGG- -5'
23487 3' -56.4 NC_005259.1 + 43612 0.68 0.60914
Target:  5'- aCGAUGGCccCGaUGAUCGGCACcugagacacACCa -3'
miRNA:   3'- aGCUGCCGcuGCaACUGGCCGUG---------UGG- -5'
23487 3' -56.4 NC_005259.1 + 58727 0.68 0.60914
Target:  5'- cCGGgGGUGuCGUUGgcACCGGCACcgGCg -3'
miRNA:   3'- aGCUgCCGCuGCAAC--UGGCCGUG--UGg -5'
23487 3' -56.4 NC_005259.1 + 41852 0.68 0.607029
Target:  5'- cUCGACGGUGucccacucGACgGGCAgCACCg -3'
miRNA:   3'- -AGCUGCCGCugcaa---CUGgCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 17501 0.68 0.605973
Target:  5'- -gGACGGCGACcUUG-CCgauccgagcucgugGGCACACa -3'
miRNA:   3'- agCUGCCGCUGcAACuGG--------------CCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 20653 0.69 0.59859
Target:  5'- uUCGGCGGC-ACcggGGCCGaGgACGCCa -3'
miRNA:   3'- -AGCUGCCGcUGcaaCUGGC-CgUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 12181 0.69 0.59859
Target:  5'- gUCGAaccugcCGGacCGugGUcguguagagaUGcACCGGCGCACCg -3'
miRNA:   3'- -AGCU------GCC--GCugCA----------AC-UGGCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 19217 0.69 0.597536
Target:  5'- -gGGCGGCGACGUggGACaccgaguCGGCGaugaucgauggcCGCCu -3'
miRNA:   3'- agCUGCCGCUGCAa-CUG-------GCCGU------------GUGG- -5'
23487 3' -56.4 NC_005259.1 + 23838 0.69 0.596483
Target:  5'- aUCGAugagaaUGGCGAUuucuacccCCGGCACACCg -3'
miRNA:   3'- -AGCU------GCCGCUGcaacu---GGCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 49566 0.69 0.588066
Target:  5'- uUCGuCGGuCGugGccaGACCGGCgggcggggucaGCACCu -3'
miRNA:   3'- -AGCuGCC-GCugCaa-CUGGCCG-----------UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 64612 0.69 0.577576
Target:  5'- cUGACGGCGAgCGc-GACgGGCagcaGCGCCc -3'
miRNA:   3'- aGCUGCCGCU-GCaaCUGgCCG----UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.