Results 1 - 20 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 66263 | 0.66 | 0.724593 |
Target: 5'- gGCCCGcGCCGgGCggCG-GCUCAc- -3' miRNA: 3'- aCGGGCuCGGCaUGuaGCuCGAGUcu -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 33981 | 0.66 | 0.714125 |
Target: 5'- uUGCCCuGAGCCGgguaUGCggUGAGCUgCAa- -3' miRNA: 3'- -ACGGG-CUCGGC----AUGuaGCUCGA-GUcu -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 31794 | 0.66 | 0.692968 |
Target: 5'- uUGaCCGcGUCGU-CAUCGAGCUCGa- -3' miRNA: 3'- -ACgGGCuCGGCAuGUAGCUCGAGUcu -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 61392 | 0.66 | 0.682298 |
Target: 5'- cGCCCGAuGCCGU-CGguguccucgCGGGCaCGGAc -3' miRNA: 3'- aCGGGCU-CGGCAuGUa--------GCUCGaGUCU- -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 38064 | 0.66 | 0.682298 |
Target: 5'- cUGCCgaCGAGCCGc-CAUCGAGCa---- -3' miRNA: 3'- -ACGG--GCUCGGCauGUAGCUCGagucu -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 14021 | 0.66 | 0.682298 |
Target: 5'- cUGCCCGAcgGCaCGauCAUCGAGCggCAGc -3' miRNA: 3'- -ACGGGCU--CG-GCauGUAGCUCGa-GUCu -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 27332 | 0.67 | 0.657602 |
Target: 5'- uUGCCuCGGuagagcauccaaucGCCGUACugAUCGGGCUUGGu -3' miRNA: 3'- -ACGG-GCU--------------CGGCAUG--UAGCUCGAGUCu -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 68116 | 0.67 | 0.650057 |
Target: 5'- aGUUCGGGUCGagaGCAgcggCGAGCUCGGc -3' miRNA: 3'- aCGGGCUCGGCa--UGUa---GCUCGAGUCu -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 53556 | 0.68 | 0.55345 |
Target: 5'- gGCUCGGGCgGUGCGaucCGAGUaCGGAa -3' miRNA: 3'- aCGGGCUCGgCAUGUa--GCUCGaGUCU- -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 50430 | 0.69 | 0.542913 |
Target: 5'- gGCUCGGGCa--GCGgugCGGGCUCGGGg -3' miRNA: 3'- aCGGGCUCGgcaUGUa--GCUCGAGUCU- -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 45224 | 0.69 | 0.542913 |
Target: 5'- aGCCCGAuGCCcUGCAcCuuGCUCAGGu -3' miRNA: 3'- aCGGGCU-CGGcAUGUaGcuCGAGUCU- -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 63030 | 0.69 | 0.538717 |
Target: 5'- aUGCCCGcgagcugacucgacAGCagcggugCGUACAUCGcgaugAGCUCAGGg -3' miRNA: 3'- -ACGGGC--------------UCG-------GCAUGUAGC-----UCGAGUCU- -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 4805 | 0.69 | 0.522047 |
Target: 5'- cUGCCCGAGCUGccagACGUUGcGCcgaCAGAc -3' miRNA: 3'- -ACGGGCUCGGCa---UGUAGCuCGa--GUCU- -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 7313 | 0.71 | 0.427043 |
Target: 5'- gUGCCCGAGUUcaccgccgucgccgaGUACGUCGAGgC-CGGAc -3' miRNA: 3'- -ACGGGCUCGG---------------CAUGUAGCUC-GaGUCU- -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 59124 | 0.71 | 0.423306 |
Target: 5'- gGCaUCGAGCaGaGCGUCGAGCUCGGc -3' miRNA: 3'- aCG-GGCUCGgCaUGUAGCUCGAGUCu -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 55762 | 0.71 | 0.41405 |
Target: 5'- cGUgCGcAGCCGcguacGCGUCGAGCUCGGc -3' miRNA: 3'- aCGgGC-UCGGCa----UGUAGCUCGAGUCu -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 25348 | 0.71 | 0.41405 |
Target: 5'- gUGCCCGAGCCGggaACGcCGAacGCaCAGAc -3' miRNA: 3'- -ACGGGCUCGGCa--UGUaGCU--CGaGUCU- -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 44126 | 0.73 | 0.313275 |
Target: 5'- cGCCUGuAGCUGUGCGUUGAGCg-AGGu -3' miRNA: 3'- aCGGGC-UCGGCAUGUAGCUCGagUCU- -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 9361 | 0.73 | 0.305768 |
Target: 5'- cGUCUGuaGGUCGUACucggCGAGCUCGGAg -3' miRNA: 3'- aCGGGC--UCGGCAUGua--GCUCGAGUCU- -5' |
|||||||
23489 | 5' | -56.4 | NC_005259.1 | + | 30272 | 0.73 | 0.2984 |
Target: 5'- aUGCaCCGGGCCagcaGCGUCGAGCUCu-- -3' miRNA: 3'- -ACG-GGCUCGGca--UGUAGCUCGAGucu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home