Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23490 | 5' | -54.9 | NC_005259.1 | + | 11779 | 0.66 | 0.835683 |
Target: 5'- -aCGGCGAGGGAGUCccacacaUCGgGCGc -3' miRNA: 3'- ccGCCGCUCCUUUAGcuac---AGCgCGC- -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 31277 | 0.66 | 0.817976 |
Target: 5'- aGGCGGUGGcGAGAUCuugcccgGUCuGCGCa -3' miRNA: 3'- -CCGCCGCUcCUUUAGcua----CAG-CGCGc -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 64948 | 0.66 | 0.817976 |
Target: 5'- gGGUGGCcGGGuuGUCGAUgGUCaUGCa -3' miRNA: 3'- -CCGCCGcUCCuuUAGCUA-CAGcGCGc -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 22226 | 0.66 | 0.799527 |
Target: 5'- cGCcGCGAGGcuGUCGGUuuccGUCGaCGCa -3' miRNA: 3'- cCGcCGCUCCuuUAGCUA----CAGC-GCGc -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 21008 | 0.66 | 0.799527 |
Target: 5'- gGGCGGCGAcccugaccGGcagcuGAcCGAUGaccggCGCGCGu -3' miRNA: 3'- -CCGCCGCU--------CCu----UUaGCUACa----GCGCGC- -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 59087 | 0.66 | 0.798586 |
Target: 5'- uGUGGCGGGcagugauGAcGUUGAUGUcagcaCGCGCGg -3' miRNA: 3'- cCGCCGCUC-------CUuUAGCUACA-----GCGCGC- -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 46401 | 0.67 | 0.790048 |
Target: 5'- cGCGGUGAGGgcAUCGAaacCGgGCu -3' miRNA: 3'- cCGCCGCUCCuuUAGCUacaGCgCGc -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 67238 | 0.67 | 0.774561 |
Target: 5'- cGGCGGUGuAGGGGuugagCGGggccucgggcagccgUGUCGCGUc -3' miRNA: 3'- -CCGCCGC-UCCUUua---GCU---------------ACAGCGCGc -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 3174 | 0.67 | 0.760714 |
Target: 5'- -cCGGCGAugucaaGGucGUCGGUG-CGCGCa -3' miRNA: 3'- ccGCCGCU------CCuuUAGCUACaGCGCGc -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 19217 | 0.67 | 0.750672 |
Target: 5'- gGGCGGCGAcguGGGAcacCGA-GUCG-GCGa -3' miRNA: 3'- -CCGCCGCU---CCUUua-GCUaCAGCgCGC- -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 6655 | 0.67 | 0.750672 |
Target: 5'- -aCGGuCGAGGguGUCcGUGaCGCGCGa -3' miRNA: 3'- ccGCC-GCUCCuuUAGcUACaGCGCGC- -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 67469 | 0.67 | 0.740514 |
Target: 5'- cGGCgauGGCGGGGAuAUUGAUGacUCGC-Ca -3' miRNA: 3'- -CCG---CCGCUCCUuUAGCUAC--AGCGcGc -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 46320 | 0.68 | 0.730254 |
Target: 5'- cGCGGCcccGAGGG--UCGc-GUCGCGCa -3' miRNA: 3'- cCGCCG---CUCCUuuAGCuaCAGCGCGc -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 41102 | 0.68 | 0.719899 |
Target: 5'- cGGCGGuCGGcGGuauGA-CGAUGUCG-GCGg -3' miRNA: 3'- -CCGCC-GCU-CCu--UUaGCUACAGCgCGC- -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 27836 | 0.68 | 0.719899 |
Target: 5'- uGC-GCGAGGuAGgccgCGAgGUCGCGCGc -3' miRNA: 3'- cCGcCGCUCCuUUa---GCUaCAGCGCGC- -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 28238 | 0.68 | 0.719899 |
Target: 5'- cGGCGGCGGGGugGUCGAUcacgauccaUUGCcCGa -3' miRNA: 3'- -CCGCCGCUCCuuUAGCUAc--------AGCGcGC- -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 57443 | 0.68 | 0.719899 |
Target: 5'- cGCGGCGAGG---UUGGUGcgaCGCuGCGg -3' miRNA: 3'- cCGCCGCUCCuuuAGCUACa--GCG-CGC- -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 17182 | 0.68 | 0.688383 |
Target: 5'- aGGCGGCGcAGGAAGccgCGcGUGagGCGgGu -3' miRNA: 3'- -CCGCCGC-UCCUUUa--GC-UACagCGCgC- -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 27409 | 0.69 | 0.631741 |
Target: 5'- cGGCGGCagcucggugcccgcGAGGAAuuggcucacgcGUCGcaugagcucGUCGCGCGg -3' miRNA: 3'- -CCGCCG--------------CUCCUU-----------UAGCua-------CAGCGCGC- -5' |
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23490 | 5' | -54.9 | NC_005259.1 | + | 43066 | 0.69 | 0.62423 |
Target: 5'- gGGuCGGUGAGGAAcgCGAgcccGUUGcCGCc -3' miRNA: 3'- -CC-GCCGCUCCUUuaGCUa---CAGC-GCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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