Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23490 | 5' | -54.9 | NC_005259.1 | + | 41726 | 0.7 | 0.617795 |
|
Target: 5'- cGGCGGCGGGGAGGacaccgccUCGAcacGcucgaccucgcagccUUGCGCGa -3' miRNA: 3'- -CCGCCGCUCCUUU--------AGCUa--C---------------AGCGCGC- -5' |
|||||||
| 23490 | 5' | -54.9 | NC_005259.1 | + | 23290 | 0.7 | 0.613507 |
|
Target: 5'- cGCGGUGGuuGGguAUCGggGUCcgGCGCGg -3' miRNA: 3'- cCGCCGCU--CCuuUAGCuaCAG--CGCGC- -5' |
|||||||
| 23490 | 5' | -54.9 | NC_005259.1 | + | 61033 | 0.7 | 0.592115 |
|
Target: 5'- uGGCGGCGAGG---UCGAccGaCGgGCGg -3' miRNA: 3'- -CCGCCGCUCCuuuAGCUa-CaGCgCGC- -5' |
|||||||
| 23490 | 5' | -54.9 | NC_005259.1 | + | 28008 | 0.7 | 0.581463 |
|
Target: 5'- cGgGGCGGGGucgcCGggGUUGCGCGc -3' miRNA: 3'- cCgCCGCUCCuuuaGCuaCAGCGCGC- -5' |
|||||||
| 23490 | 5' | -54.9 | NC_005259.1 | + | 17618 | 0.71 | 0.560287 |
|
Target: 5'- gGGCGGCGAGGA---CGGUuUCGCa-- -3' miRNA: 3'- -CCGCCGCUCCUuuaGCUAcAGCGcgc -5' |
|||||||
| 23490 | 5' | -54.9 | NC_005259.1 | + | 60621 | 0.72 | 0.498282 |
|
Target: 5'- aGGCGGCGAGGu-GUgGAacUG-CGCGUa -3' miRNA: 3'- -CCGCCGCUCCuuUAgCU--ACaGCGCGc -5' |
|||||||
| 23490 | 5' | -54.9 | NC_005259.1 | + | 9498 | 0.72 | 0.488235 |
|
Target: 5'- --aGGCGAGGAAcgUGcgcucGUCGCGCGc -3' miRNA: 3'- ccgCCGCUCCUUuaGCua---CAGCGCGC- -5' |
|||||||
| 23490 | 5' | -54.9 | NC_005259.1 | + | 42612 | 0.74 | 0.376279 |
|
Target: 5'- cGGCGGUcauGAGccCGAUGUCGCGCGu -3' miRNA: 3'- -CCGCCGcucCUUuaGCUACAGCGCGC- -5' |
|||||||
| 23490 | 5' | -54.9 | NC_005259.1 | + | 35215 | 0.76 | 0.282973 |
|
Target: 5'- aGGCGGCGAGGAAcgUGAccgccaCGCGUGc -3' miRNA: 3'- -CCGCCGCUCCUUuaGCUaca---GCGCGC- -5' |
|||||||
| 23490 | 5' | -54.9 | NC_005259.1 | + | 11720 | 0.76 | 0.282973 |
|
Target: 5'- gGGCcacGGCGAGGcucAGAUCGAUGgUGCGCa -3' miRNA: 3'- -CCG---CCGCUCC---UUUAGCUACaGCGCGc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home