miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23491 3' -61.4 NC_005259.1 + 32198 0.68 0.397944
Target:  5'- uCGGUCugCGAcuUGGCCUCagACACCg -3'
miRNA:   3'- -GCCGGugGCUccACCGGGGcaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 13559 0.68 0.397944
Target:  5'- uGGcCCGCCGAccccGCCCCG-ACACCc -3'
miRNA:   3'- gCC-GGUGGCUccacCGGGGCaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 56238 0.68 0.388605
Target:  5'- -cGCCGCCGAccacguugggaucGGcGGCCuuGaGCGCCg -3'
miRNA:   3'- gcCGGUGGCU-------------CCaCCGGggCaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 50085 0.68 0.381072
Target:  5'- gCGGCagcuCGCCGAuGGUGcGCCCgagguugccCGUACGCa -3'
miRNA:   3'- -GCCG----GUGGCU-CCAC-CGGG---------GCAUGUGg -5'
23491 3' -61.4 NC_005259.1 + 43031 0.68 0.381072
Target:  5'- -uGCCGCCGAGcaGGCCgCCGaGCAgCg -3'
miRNA:   3'- gcCGGUGGCUCcaCCGG-GGCaUGUgG- -5'
23491 3' -61.4 NC_005259.1 + 65751 0.68 0.372817
Target:  5'- uGGaUCGCCGAGuaGUGGUaCCCGUACAg- -3'
miRNA:   3'- gCC-GGUGGCUC--CACCG-GGGCAUGUgg -5'
23491 3' -61.4 NC_005259.1 + 20409 0.68 0.372817
Target:  5'- aGGgCAUCGAGGUcuacccGGUCaCCG-ACGCCa -3'
miRNA:   3'- gCCgGUGGCUCCA------CCGG-GGCaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 56696 0.68 0.364685
Target:  5'- aCGGCUG-CGAGGUGGCcacgauggugucCCCGaGCGCg -3'
miRNA:   3'- -GCCGGUgGCUCCACCG------------GGGCaUGUGg -5'
23491 3' -61.4 NC_005259.1 + 45320 0.68 0.364685
Target:  5'- aGGCCGCCGccgaacuGcGUGGCCU---GCGCCg -3'
miRNA:   3'- gCCGGUGGCu------C-CACCGGGgcaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 2177 0.68 0.362269
Target:  5'- cCGGUUGCCGAGGUcaugGGCCgcuacggcaaggugCUGcGCACCg -3'
miRNA:   3'- -GCCGGUGGCUCCA----CCGG--------------GGCaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 45161 0.69 0.348792
Target:  5'- aGGCCGCCcu--UGGCCuuGUugcGCGCCg -3'
miRNA:   3'- gCCGGUGGcuccACCGGggCA---UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 7676 0.69 0.341032
Target:  5'- --cCCGCCucguGGGGUGGCCCguaCGUcuGCACCa -3'
miRNA:   3'- gccGGUGG----CUCCACCGGG---GCA--UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 46822 0.69 0.341032
Target:  5'- cCGGCCACCuGAGuGaGcGCCCCGgcgaGCugCc -3'
miRNA:   3'- -GCCGGUGG-CUC-CaC-CGGGGCa---UGugG- -5'
23491 3' -61.4 NC_005259.1 + 16415 0.69 0.333398
Target:  5'- aGcCCACCGAGGUgcccgucgagcGGCCCaaaccggGCACCg -3'
miRNA:   3'- gCcGGUGGCUCCA-----------CCGGGgca----UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 13409 0.69 0.333398
Target:  5'- uCGGCCuuccugGCCGGGGUcGCCgCCGgggccGCGCUa -3'
miRNA:   3'- -GCCGG------UGGCUCCAcCGG-GGCa----UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 36021 0.69 0.328879
Target:  5'- uGGCCAgCGAGGUcgacaugaucagcgaGGCcaCCCGcgcgaGCACCa -3'
miRNA:   3'- gCCGGUgGCUCCA---------------CCG--GGGCa----UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 38682 0.69 0.311254
Target:  5'- uGGCCGCCgggucGAGGuUGGCCaCCugagacuguagGUugACCa -3'
miRNA:   3'- gCCGGUGG-----CUCC-ACCGG-GG-----------CAugUGG- -5'
23491 3' -61.4 NC_005259.1 + 42516 0.7 0.304125
Target:  5'- uGGCCagcaGCCGucc-GGCCCCGauggGCACCg -3'
miRNA:   3'- gCCGG----UGGCuccaCCGGGGCa---UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 17830 0.7 0.297122
Target:  5'- aGGCCAUCGAcGGgugGGCCgaGgcCACCc -3'
miRNA:   3'- gCCGGUGGCU-CCa--CCGGggCauGUGG- -5'
23491 3' -61.4 NC_005259.1 + 33085 0.7 0.290245
Target:  5'- uGGCCACCuGuAGGUaGGCCCgCGaGCguGCCu -3'
miRNA:   3'- gCCGGUGG-C-UCCA-CCGGG-GCaUG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.