miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23491 3' -61.4 NC_005259.1 + 24801 0.79 0.063582
Target:  5'- gGGCCaagACCGAGGU-GCCCCGgcACGCCg -3'
miRNA:   3'- gCCGG---UGGCUCCAcCGGGGCa-UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 2009 0.77 0.097719
Target:  5'- gCGGCCAUCG-GGUGGCgCaCCG-GCACCu -3'
miRNA:   3'- -GCCGGUGGCuCCACCG-G-GGCaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 63177 0.76 0.120719
Target:  5'- aGcGCCGCCGAGGUGaucgcaCCCCGgucgUGCGCCu -3'
miRNA:   3'- gC-CGGUGGCUCCACc-----GGGGC----AUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 66858 0.75 0.123926
Target:  5'- gGGCCACCGAuc-GGCCuuGUucGCACCg -3'
miRNA:   3'- gCCGGUGGCUccaCCGGggCA--UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 67771 0.75 0.123926
Target:  5'- cCGGCCACCGAccacgcGGUGaCCuuGUugGCACCg -3'
miRNA:   3'- -GCCGGUGGCU------CCACcGGggCA--UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 68565 0.75 0.130578
Target:  5'- uGaGCCaACCGAGGUGGaCCUCGUAuccggcggcCACCg -3'
miRNA:   3'- gC-CGG-UGGCUCCACC-GGGGCAU---------GUGG- -5'
23491 3' -61.4 NC_005259.1 + 10777 0.74 0.156529
Target:  5'- gGGUCAUCGAGGUGGgCCgCGaGCGCa -3'
miRNA:   3'- gCCGGUGGCUCCACCgGG-GCaUGUGg -5'
23491 3' -61.4 NC_005259.1 + 30828 0.74 0.156529
Target:  5'- cCGGCgCGCCGAGGUcGGCaaCC-UGCACCu -3'
miRNA:   3'- -GCCG-GUGGCUCCA-CCGg-GGcAUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 28015 0.74 0.16476
Target:  5'- gGGUCGCCGGGGUuGCgCgCGUugGCCa -3'
miRNA:   3'- gCCGGUGGCUCCAcCG-GgGCAugUGG- -5'
23491 3' -61.4 NC_005259.1 + 33594 0.73 0.173377
Target:  5'- gGGCCACCGAGGcgcGGUCgagcugcaaCCGgcCACCg -3'
miRNA:   3'- gCCGGUGGCUCCa--CCGG---------GGCauGUGG- -5'
23491 3' -61.4 NC_005259.1 + 15148 0.73 0.177835
Target:  5'- gGGCCACCucGGUGGCCgaggCCG-AgGCCa -3'
miRNA:   3'- gCCGGUGGcuCCACCGG----GGCaUgUGG- -5'
23491 3' -61.4 NC_005259.1 + 35487 0.72 0.196698
Target:  5'- aGGCCGaacgauCCuGGGuUGGCCCCGUugcCGCCg -3'
miRNA:   3'- gCCGGU------GGcUCC-ACCGGGGCAu--GUGG- -5'
23491 3' -61.4 NC_005259.1 + 55036 0.72 0.196698
Target:  5'- gGGCUGCCGAGGUGcuuGCCUCGgugGCAg- -3'
miRNA:   3'- gCCGGUGGCUCCAC---CGGGGCa--UGUgg -5'
23491 3' -61.4 NC_005259.1 + 56103 0.72 0.196698
Target:  5'- gGGCCACCGc-GUGGCCaCCGaaacugugUGCGCUg -3'
miRNA:   3'- gCCGGUGGCucCACCGG-GGC--------AUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 7957 0.72 0.211971
Target:  5'- aCGGCUGCUu-GGUGGCCCaCGccCACCg -3'
miRNA:   3'- -GCCGGUGGcuCCACCGGG-GCauGUGG- -5'
23491 3' -61.4 NC_005259.1 + 23006 0.72 0.217284
Target:  5'- aGGUCACCGAGGacGGCUCgGU-CAUCg -3'
miRNA:   3'- gCCGGUGGCUCCa-CCGGGgCAuGUGG- -5'
23491 3' -61.4 NC_005259.1 + 45513 0.72 0.222711
Target:  5'- uGGCCACCGcgccGGUguuGGCCgCCGUgGCugCg -3'
miRNA:   3'- gCCGGUGGCu---CCA---CCGG-GGCA-UGugG- -5'
23491 3' -61.4 NC_005259.1 + 44486 0.71 0.226578
Target:  5'- gGGCCaguuggugacguagACCGGGGU-GCCCUGgcCACCc -3'
miRNA:   3'- gCCGG--------------UGGCUCCAcCGGGGCauGUGG- -5'
23491 3' -61.4 NC_005259.1 + 47471 0.71 0.233911
Target:  5'- -aGCCACCGAGGUGaUCgCGU-CACCg -3'
miRNA:   3'- gcCGGUGGCUCCACcGGgGCAuGUGG- -5'
23491 3' -61.4 NC_005259.1 + 12552 0.71 0.239686
Target:  5'- aCGGCauuGCCGGGGUGGCCCgccaGauccAUGCCg -3'
miRNA:   3'- -GCCGg--UGGCUCCACCGGGg---Ca---UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.