miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23491 3' -61.4 NC_005259.1 + 903 0.71 0.24558
Target:  5'- ---aCACCGAGGUGGUgCCCGgcgauCACCu -3'
miRNA:   3'- gccgGUGGCUCCACCG-GGGCau---GUGG- -5'
23491 3' -61.4 NC_005259.1 + 2009 0.77 0.097719
Target:  5'- gCGGCCAUCG-GGUGGCgCaCCG-GCACCu -3'
miRNA:   3'- -GCCGGUGGCuCCACCG-G-GGCaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 2177 0.68 0.362269
Target:  5'- cCGGUUGCCGAGGUcaugGGCCgcuacggcaaggugCUGcGCACCg -3'
miRNA:   3'- -GCCGGUGGCUCCA----CCGG--------------GGCaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 3261 0.66 0.498653
Target:  5'- uCGGCauccuGCUcGGGUGGUuuCCCGU-CGCCg -3'
miRNA:   3'- -GCCGg----UGGcUCCACCG--GGGCAuGUGG- -5'
23491 3' -61.4 NC_005259.1 + 4476 0.67 0.424131
Target:  5'- aGGCCAUCGGcGGUGGaCCaUgGUGauCGCCa -3'
miRNA:   3'- gCCGGUGGCU-CCACC-GG-GgCAU--GUGG- -5'
23491 3' -61.4 NC_005259.1 + 5420 0.66 0.460595
Target:  5'- uGGCCGCCacgucGAGGUcuGCgCCCGcUGcCGCCg -3'
miRNA:   3'- gCCGGUGG-----CUCCAc-CG-GGGC-AU-GUGG- -5'
23491 3' -61.4 NC_005259.1 + 5553 0.67 0.44215
Target:  5'- aGGCCGCgUGGGGUGGUgaCGgcgAgACCg -3'
miRNA:   3'- gCCGGUG-GCUCCACCGggGCa--UgUGG- -5'
23491 3' -61.4 NC_005259.1 + 7676 0.69 0.341032
Target:  5'- --cCCGCCucguGGGGUGGCCCguaCGUcuGCACCa -3'
miRNA:   3'- gccGGUGG----CUCCACCGGG---GCA--UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 7855 0.67 0.432186
Target:  5'- aCGGaCCgcGCCGAccccGGUGGCCCgaGUGCuuggacucgggcaGCCg -3'
miRNA:   3'- -GCC-GG--UGGCU----CCACCGGGg-CAUG-------------UGG- -5'
23491 3' -61.4 NC_005259.1 + 7957 0.72 0.211971
Target:  5'- aCGGCUGCUu-GGUGGCCCaCGccCACCg -3'
miRNA:   3'- -GCCGGUGGcuCCACCGGG-GCauGUGG- -5'
23491 3' -61.4 NC_005259.1 + 8176 0.67 0.424131
Target:  5'- aGGCUACCcccGUGGCCugCCGUuuacGCGCCc -3'
miRNA:   3'- gCCGGUGGcucCACCGG--GGCA----UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 10104 0.67 0.431286
Target:  5'- aGGCCACCGAGcucaagaCCGUGCGCa -3'
miRNA:   3'- gCCGGUGGCUCcaccgg-GGCAUGUGg -5'
23491 3' -61.4 NC_005259.1 + 10777 0.74 0.156529
Target:  5'- gGGUCAUCGAGGUGGgCCgCGaGCGCa -3'
miRNA:   3'- gCCGGUGGCUCCACCgGG-GCaUGUGg -5'
23491 3' -61.4 NC_005259.1 + 12552 0.71 0.239686
Target:  5'- aCGGCauuGCCGGGGUGGCCCgccaGauccAUGCCg -3'
miRNA:   3'- -GCCGg--UGGCUCCACCGGGg---Ca---UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 13235 0.66 0.466208
Target:  5'- cCGGCCACCguGAGGgccGaGCaCCCGgcgguagaugagaACACCu -3'
miRNA:   3'- -GCCGGUGG--CUCCa--C-CG-GGGCa------------UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 13409 0.69 0.333398
Target:  5'- uCGGCCuuccugGCCGGGGUcGCCgCCGgggccGCGCUa -3'
miRNA:   3'- -GCCGG------UGGCUCCAcCGG-GGCa----UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 13559 0.68 0.397944
Target:  5'- uGGcCCGCCGAccccGCCCCG-ACACCc -3'
miRNA:   3'- gCC-GGUGGCUccacCGGGGCaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 14058 0.66 0.479439
Target:  5'- uCGGCgacgagaccagCACgGcGGUGGCCUaCGUGCGCa -3'
miRNA:   3'- -GCCG-----------GUGgCuCCACCGGG-GCAUGUGg -5'
23491 3' -61.4 NC_005259.1 + 15148 0.73 0.177835
Target:  5'- gGGCCACCucGGUGGCCgaggCCG-AgGCCa -3'
miRNA:   3'- gCCGGUGGcuCCACCGG----GGCaUgUGG- -5'
23491 3' -61.4 NC_005259.1 + 15422 0.66 0.512305
Target:  5'- gCGuGCCACCaAGGccgaucucgaguaucUGGCcgagaucaaCCCGUugGCCa -3'
miRNA:   3'- -GC-CGGUGGcUCC---------------ACCG---------GGGCAugUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.