Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23494 | 5' | -52.4 | NC_005259.1 | + | 34875 | 0.66 | 0.917053 |
Target: 5'- cGGUGCCGgacCGG-GGUGccUCGGGcAGGa -3' miRNA: 3'- -CCACGGCa--GCCgCCACu-AGUUCuUUC- -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 66468 | 0.66 | 0.904183 |
Target: 5'- cGGUgacGCUGgUGGCGGUGGUCucGAu-- -3' miRNA: 3'- -CCA---CGGCaGCCGCCACUAGuuCUuuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 27384 | 0.67 | 0.882871 |
Target: 5'- cGGUGaCCGgCGGCGGUG-UCGGc---- -3' miRNA: 3'- -CCAC-GGCaGCCGCCACuAGUUcuuuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 60599 | 0.67 | 0.866575 |
Target: 5'- gGGUGCCGUCaucgagcagcacaGGCGGcgaGGUguGGAAc- -3' miRNA: 3'- -CCACGGCAG-------------CCGCCa--CUAguUCUUuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 4995 | 0.67 | 0.85926 |
Target: 5'- --gGCCGggcacuaCGGCaaGGUGGUCGAGAucGa -3' miRNA: 3'- ccaCGGCa------GCCG--CCACUAGUUCUuuC- -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 47191 | 0.68 | 0.842327 |
Target: 5'- cGGUGCCGUCGGCG------AAGAAc- -3' miRNA: 3'- -CCACGGCAGCCGCcacuagUUCUUuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 27170 | 0.68 | 0.842327 |
Target: 5'- -aUGCCGUCGGCGaUGAgCAGGc--- -3' miRNA: 3'- ccACGGCAGCCGCcACUaGUUCuuuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 7423 | 0.68 | 0.842327 |
Target: 5'- --cGCCGUCGGCGGUGccCGc----- -3' miRNA: 3'- ccaCGGCAGCCGCCACuaGUucuuuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 14808 | 0.68 | 0.842327 |
Target: 5'- --cGCCGggcugaugacCGGUgaGGUGAUCAAGAAAc -3' miRNA: 3'- ccaCGGCa---------GCCG--CCACUAGUUCUUUc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 18742 | 0.68 | 0.833527 |
Target: 5'- cGGUaaGUCGUCGGUGGUGcUCGAc---- -3' miRNA: 3'- -CCA--CGGCAGCCGCCACuAGUUcuuuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 26974 | 0.68 | 0.815304 |
Target: 5'- cGUGCCGaacUCGGCGGUGu---AGAc-- -3' miRNA: 3'- cCACGGC---AGCCGCCACuaguUCUuuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 41641 | 0.69 | 0.796317 |
Target: 5'- cGGUGCCGgucugCGGgcgcuCGGUGAgCGGGAu-- -3' miRNA: 3'- -CCACGGCa----GCC-----GCCACUaGUUCUuuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 26811 | 0.69 | 0.786562 |
Target: 5'- cGGUugGCCGguacCGGCGGUGGUgcCGGGgcGGu -3' miRNA: 3'- -CCA--CGGCa---GCCGCCACUA--GUUCuuUC- -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 67211 | 0.69 | 0.766583 |
Target: 5'- --cGCUGUCGGCGG-GGUCGAu---- -3' miRNA: 3'- ccaCGGCAGCCGCCaCUAGUUcuuuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 28329 | 0.69 | 0.756382 |
Target: 5'- uGUGCCGUCcuuGGCGGcGAaaUCGAGGc-- -3' miRNA: 3'- cCACGGCAG---CCGCCaCU--AGUUCUuuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 28002 | 0.69 | 0.756382 |
Target: 5'- gGGUGCCGg-GGCGG-GGUCGccGGGGu- -3' miRNA: 3'- -CCACGGCagCCGCCaCUAGU--UCUUuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 31253 | 0.7 | 0.718693 |
Target: 5'- cGGUGCCGcCccacacgccgcaguaGGCGGUGG-CGAGAu-- -3' miRNA: 3'- -CCACGGCaG---------------CCGCCACUaGUUCUuuc -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 33319 | 0.77 | 0.365146 |
Target: 5'- --cGCCGUCGGCGGUcacgcggaaguGAUCGGGGucGa -3' miRNA: 3'- ccaCGGCAGCCGCCA-----------CUAGUUCUuuC- -5' |
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23494 | 5' | -52.4 | NC_005259.1 | + | 22389 | 0.78 | 0.316053 |
Target: 5'- cGGUcgGCC-UCGGCGacGUGAUCGAGAAAGu -3' miRNA: 3'- -CCA--CGGcAGCCGC--CACUAGUUCUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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