miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23496 5' -51.6 NC_005259.1 + 53000 0.66 0.934712
Target:  5'- cGGcaauuGCCUCGAcugggcgcuGCGGUgGCGUCGAg -3'
miRNA:   3'- aCCaau--UGGGGUU---------UGCCGgUGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 27047 0.66 0.934712
Target:  5'- uUGGccUUGGCCUgAgcGACGGUCACggCGAc -3'
miRNA:   3'- -ACC--AAUUGGGgU--UUGCCGGUGuaGCU- -5'
23496 5' -51.6 NC_005259.1 + 3818 0.66 0.929181
Target:  5'- aGGUgaccaCCCAcGgGGCCACGaCGAu -3'
miRNA:   3'- aCCAauug-GGGUuUgCCGGUGUaGCU- -5'
23496 5' -51.6 NC_005259.1 + 31253 0.66 0.929181
Target:  5'- cGGUgccGCCCCAcACG-CCGCAguaggCGGu -3'
miRNA:   3'- aCCAau-UGGGGUuUGCcGGUGUa----GCU- -5'
23496 5' -51.6 NC_005259.1 + 46739 0.66 0.929181
Target:  5'- aGGUgAugCCCGcGAUGGCUGCGcCGAc -3'
miRNA:   3'- aCCAaUugGGGU-UUGCCGGUGUaGCU- -5'
23496 5' -51.6 NC_005259.1 + 5012 0.66 0.911541
Target:  5'- aGGUggucgagaucgauccGGCCCCAcACGacagcGCCACGUUGAu -3'
miRNA:   3'- aCCAa--------------UUGGGGUuUGC-----CGGUGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 33096 0.66 0.91089
Target:  5'- aGGUaGGCCCgCGAGCgugccuguagGGCCACG-CGGc -3'
miRNA:   3'- aCCAaUUGGG-GUUUG----------CCGGUGUaGCU- -5'
23496 5' -51.6 NC_005259.1 + 46322 0.67 0.890089
Target:  5'- ----cGGCCCCGAG-GGUCGCGUCGc -3'
miRNA:   3'- accaaUUGGGGUUUgCCGGUGUAGCu -5'
23496 5' -51.6 NC_005259.1 + 25407 0.67 0.890089
Target:  5'- cGGUUu-CCUCAaccggGACGGCgAgGUCGAg -3'
miRNA:   3'- aCCAAuuGGGGU-----UUGCCGgUgUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 31820 0.67 0.874874
Target:  5'- ----cGACCCCAccGCGcCCGCGUCGAu -3'
miRNA:   3'- accaaUUGGGGUu-UGCcGGUGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 68011 0.67 0.874874
Target:  5'- -----uGCCCUccuGCGGCgGCAUCGAg -3'
miRNA:   3'- accaauUGGGGuu-UGCCGgUGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 54188 0.67 0.874874
Target:  5'- uUGG-UGGCCCuCAGGCGGCgGCccUUGAc -3'
miRNA:   3'- -ACCaAUUGGG-GUUUGCCGgUGu-AGCU- -5'
23496 5' -51.6 NC_005259.1 + 66580 0.68 0.866878
Target:  5'- gGGUUAuuUCCCGAugGaucGCCGCAUCc- -3'
miRNA:   3'- aCCAAUu-GGGGUUugC---CGGUGUAGcu -5'
23496 5' -51.6 NC_005259.1 + 43187 0.68 0.866878
Target:  5'- cGGUaccGACCUC-GGCGGCgAUGUCGAc -3'
miRNA:   3'- aCCAa--UUGGGGuUUGCCGgUGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 61041 0.68 0.866064
Target:  5'- aGGUcGACCgaCGGGCGGCUcaccuugugccggGCAUCGGc -3'
miRNA:   3'- aCCAaUUGGg-GUUUGCCGG-------------UGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 8009 0.68 0.850145
Target:  5'- cGG-UAGCCCCcgccccGGCGGCCACcccguuucgCGAa -3'
miRNA:   3'- aCCaAUUGGGGu-----UUGCCGGUGua-------GCU- -5'
23496 5' -51.6 NC_005259.1 + 56035 0.68 0.838762
Target:  5'- cGGgacuuCCUCGGGCGGCUgcggguacuugaugGCGUCGAg -3'
miRNA:   3'- aCCaauu-GGGGUUUGCCGG--------------UGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 53663 0.69 0.804385
Target:  5'- cGGgccgaGGCCCCAcGCGGgCAUcgCGAu -3'
miRNA:   3'- aCCaa---UUGGGGUuUGCCgGUGuaGCU- -5'
23496 5' -51.6 NC_005259.1 + 60265 0.69 0.794638
Target:  5'- aGGcUGGCCaccagcgcugCCGGGCGGCCAuCGUCGu -3'
miRNA:   3'- aCCaAUUGG----------GGUUUGCCGGU-GUAGCu -5'
23496 5' -51.6 NC_005259.1 + 35502 0.69 0.794638
Target:  5'- gGGUUGGCCCCGuuGCcGCCGCcgCc- -3'
miRNA:   3'- aCCAAUUGGGGUu-UGcCGGUGuaGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.