miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 3' -55.2 NC_005259.1 + 50107 0.66 0.825359
Target:  5'- cCCGAGGU--UGCCCGUAcGC-ACGGg -3'
miRNA:   3'- -GGCUUCAcaAUGGGCGUcCGcUGCCg -5'
23498 3' -55.2 NC_005259.1 + 29377 0.66 0.815501
Target:  5'- gUCGAGGUc-UACCCGCcgaccuacaccgaGGGCcuCGGCg -3'
miRNA:   3'- -GGCUUCAcaAUGGGCG-------------UCCGcuGCCG- -5'
23498 3' -55.2 NC_005259.1 + 31673 0.66 0.807271
Target:  5'- cUCGAcgGG-GUUGCCCG-AGGCauccucGGCGGUg -3'
miRNA:   3'- -GGCU--UCaCAAUGGGCgUCCG------CUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 24561 0.66 0.807271
Target:  5'- gCGggGUG-UACUCGUGGGC-ACcGCa -3'
miRNA:   3'- gGCuuCACaAUGGGCGUCCGcUGcCG- -5'
23498 3' -55.2 NC_005259.1 + 45518 0.66 0.788491
Target:  5'- aCCGcgccGGUGUUGgCCGCcguGGCuGCGaGCg -3'
miRNA:   3'- -GGCu---UCACAAUgGGCGu--CCGcUGC-CG- -5'
23498 3' -55.2 NC_005259.1 + 58726 0.66 0.797963
Target:  5'- gCCGggGgugucGUUggcACCgGCAccGGCGAaguuCGGCg -3'
miRNA:   3'- -GGCuuCa----CAA---UGGgCGU--CCGCU----GCCG- -5'
23498 3' -55.2 NC_005259.1 + 182 0.66 0.816406
Target:  5'- aCCGAcucGGUcaucuaugGCgCGUGGcGCGACGGCa -3'
miRNA:   3'- -GGCU---UCAcaa-----UGgGCGUC-CGCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 61394 0.66 0.824472
Target:  5'- cCCGAugccgucGGUGUc-CUCGCGGGC-ACGGa -3'
miRNA:   3'- -GGCU-------UCACAauGGGCGUCCGcUGCCg -5'
23498 3' -55.2 NC_005259.1 + 65757 0.66 0.825359
Target:  5'- gCCGAguAGUGgUACCCguacagaucGCAGuGCGccAUGGCc -3'
miRNA:   3'- -GGCU--UCACaAUGGG---------CGUC-CGC--UGCCG- -5'
23498 3' -55.2 NC_005259.1 + 60847 0.66 0.804497
Target:  5'- gCGAGGUcgcgagACUCGCGGGUcgcguugaaucgauGACGGUg -3'
miRNA:   3'- gGCUUCAcaa---UGGGCGUCCG--------------CUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 26382 0.67 0.728793
Target:  5'- gCGAGccUGUUGCUCGCgauuccgacgccGGGCG-CGGCg -3'
miRNA:   3'- gGCUUc-ACAAUGGGCG------------UCCGCuGCCG- -5'
23498 3' -55.2 NC_005259.1 + 20523 0.67 0.728793
Target:  5'- cCCGAgcacgGGUGcgcUGCCCGCAGcGUGGUGGa -3'
miRNA:   3'- -GGCU-----UCACa--AUGGGCGUC-CGCUGCCg -5'
23498 3' -55.2 NC_005259.1 + 34540 0.67 0.736992
Target:  5'- aCCGAGGcagccucagcUugCCGUcgGGGcCGACGGCg -3'
miRNA:   3'- -GGCUUCaca-------AugGGCG--UCC-GCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 8754 0.67 0.769096
Target:  5'- gUCGAGGUcGagGCCCuuggcCAGcGCGGCGGUg -3'
miRNA:   3'- -GGCUUCA-CaaUGGGc----GUC-CGCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 13421 0.68 0.675379
Target:  5'- gCCGggGUcgccgccGggGCCgCGCuAGGCGugaccgucggcGCGGCg -3'
miRNA:   3'- -GGCuuCA-------CaaUGG-GCG-UCCGC-----------UGCCG- -5'
23498 3' -55.2 NC_005259.1 + 17328 0.68 0.673255
Target:  5'- cCCGAGGgugUGCCgGUcaacgucgccgucgAGGuCGGCGGCu -3'
miRNA:   3'- -GGCUUCacaAUGGgCG--------------UCC-GCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 37019 0.68 0.718463
Target:  5'- gCCGggGaacaugacaaUGUcgaucuuggUGCCCGCcaccgcccacGGCGGCGGUg -3'
miRNA:   3'- -GGCuuC----------ACA---------AUGGGCGu---------CCGCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 27377 0.68 0.718463
Target:  5'- cCCGGcacGGUG--ACCgGCGGcggugucggcaGCGGCGGCa -3'
miRNA:   3'- -GGCU---UCACaaUGGgCGUC-----------CGCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 8976 0.68 0.697571
Target:  5'- gCCGGGacGUaggUGCCaGC-GGCGACGGCa -3'
miRNA:   3'- -GGCUU--CAca-AUGGgCGuCCGCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 48035 0.68 0.708052
Target:  5'- aCGA--UGUUGaccacCCCGguGGCcACGGCg -3'
miRNA:   3'- gGCUucACAAU-----GGGCguCCGcUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.