miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 3' -55.2 NC_005259.1 + 182 0.66 0.816406
Target:  5'- aCCGAcucGGUcaucuaugGCgCGUGGcGCGACGGCa -3'
miRNA:   3'- -GGCU---UCAcaa-----UGgGCGUC-CGCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 905 0.69 0.630572
Target:  5'- aCCGAGGUGgUGCCCggcgaucaccugcuGCuGcGCGACaGCg -3'
miRNA:   3'- -GGCUUCACaAUGGG--------------CGuC-CGCUGcCG- -5'
23498 3' -55.2 NC_005259.1 + 2129 0.72 0.457237
Target:  5'- gCCGAGGUcacgcagACCCGCAcGGUGcuggccaGCGGCg -3'
miRNA:   3'- -GGCUUCAcaa----UGGGCGU-CCGC-------UGCCG- -5'
23498 3' -55.2 NC_005259.1 + 8652 0.68 0.68703
Target:  5'- aCGAGGcUGUggucgggcUGCCaCGCGGGCaACGGg -3'
miRNA:   3'- gGCUUC-ACA--------AUGG-GCGUCCGcUGCCg -5'
23498 3' -55.2 NC_005259.1 + 8754 0.67 0.769096
Target:  5'- gUCGAGGUcGagGCCCuuggcCAGcGCGGCGGUg -3'
miRNA:   3'- -GGCUUCA-CaaUGGGc----GUC-CGCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 8976 0.68 0.697571
Target:  5'- gCCGGGacGUaggUGCCaGC-GGCGACGGCa -3'
miRNA:   3'- -GGCUU--CAca-AUGGgCGuCCGCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 13421 0.68 0.675379
Target:  5'- gCCGggGUcgccgccGggGCCgCGCuAGGCGugaccgucggcGCGGCg -3'
miRNA:   3'- -GGCuuCA-------CaaUGG-GCG-UCCGC-----------UGCCG- -5'
23498 3' -55.2 NC_005259.1 + 17328 0.68 0.673255
Target:  5'- cCCGAGGgugUGCCgGUcaacgucgccgucgAGGuCGGCGGCu -3'
miRNA:   3'- -GGCUUCacaAUGGgCG--------------UCC-GCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 17472 0.72 0.467907
Target:  5'- aCCGuGGUGacGCCCggccauGCGGGCaagGACGGCg -3'
miRNA:   3'- -GGCuUCACaaUGGG------CGUCCG---CUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 20523 0.67 0.728793
Target:  5'- cCCGAgcacgGGUGcgcUGCCCGCAGcGUGGUGGa -3'
miRNA:   3'- -GGCU-----UCACa--AUGGGCGUC-CGCUGCCg -5'
23498 3' -55.2 NC_005259.1 + 20977 0.68 0.685973
Target:  5'- gCCGggGUGacaacUGCgUGUGGGCcuacucgGGCGGCg -3'
miRNA:   3'- -GGCuuCACa----AUGgGCGUCCG-------CUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 23632 0.79 0.179029
Target:  5'- aCGGcucGGUGUgguuucgGCCCGCcgacGGCGACGGCu -3'
miRNA:   3'- gGCU---UCACAa------UGGGCGu---CCGCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 24561 0.66 0.807271
Target:  5'- gCGggGUG-UACUCGUGGGC-ACcGCa -3'
miRNA:   3'- gGCuuCACaAUGGGCGUCCGcUGcCG- -5'
23498 3' -55.2 NC_005259.1 + 26382 0.67 0.728793
Target:  5'- gCGAGccUGUUGCUCGCgauuccgacgccGGGCG-CGGCg -3'
miRNA:   3'- gGCUUc-ACAAUGGGCG------------UCCGCuGCCG- -5'
23498 3' -55.2 NC_005259.1 + 27377 0.68 0.718463
Target:  5'- cCCGGcacGGUG--ACCgGCGGcggugucggcaGCGGCGGCa -3'
miRNA:   3'- -GGCU---UCACaaUGGgCGUC-----------CGCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 29377 0.66 0.815501
Target:  5'- gUCGAGGUc-UACCCGCcgaccuacaccgaGGGCcuCGGCg -3'
miRNA:   3'- -GGCUUCAcaAUGGGCG-------------UCCGcuGCCG- -5'
23498 3' -55.2 NC_005259.1 + 31673 0.66 0.807271
Target:  5'- cUCGAcgGG-GUUGCCCG-AGGCauccucGGCGGUg -3'
miRNA:   3'- -GGCU--UCaCAAUGGGCgUCCG------CUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 32895 0.73 0.411374
Target:  5'- aCCGggGgcgaggGUgagccacccgGCCCGCucGGGCG-CGGCg -3'
miRNA:   3'- -GGCuuCa-----CAa---------UGGGCG--UCCGCuGCCG- -5'
23498 3' -55.2 NC_005259.1 + 34540 0.67 0.736992
Target:  5'- aCCGAGGcagccucagcUugCCGUcgGGGcCGACGGCg -3'
miRNA:   3'- -GGCUUCaca-------AugGGCG--UCC-GCUGCCG- -5'
23498 3' -55.2 NC_005259.1 + 34671 0.76 0.276268
Target:  5'- uCUGAGG-GUUGCCCGCAuuGGCGcuGCGGa -3'
miRNA:   3'- -GGCUUCaCAAUGGGCGU--CCGC--UGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.