Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23498 | 3' | -55.2 | NC_005259.1 | + | 50107 | 0.66 | 0.825359 |
Target: 5'- cCCGAGGU--UGCCCGUAcGC-ACGGg -3' miRNA: 3'- -GGCUUCAcaAUGGGCGUcCGcUGCCg -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 64825 | 0.71 | 0.517913 |
Target: 5'- aUGAGcGUGUggugacggACCCuGCuGGCGAUGGCc -3' miRNA: 3'- gGCUU-CACAa-------UGGG-CGuCCGCUGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 34671 | 0.76 | 0.276268 |
Target: 5'- uCUGAGG-GUUGCCCGCAuuGGCGcuGCGGa -3' miRNA: 3'- -GGCUUCaCAAUGGGCGU--CCGC--UGCCg -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 67108 | 0.75 | 0.311961 |
Target: 5'- uCCGAGGUGUacUGCCCGCu-GCGGuCGuGCg -3' miRNA: 3'- -GGCUUCACA--AUGGGCGucCGCU-GC-CG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 66250 | 0.75 | 0.319507 |
Target: 5'- aUCGAcgcAGcGcgGCCCGCgccGGGCGGCGGCu -3' miRNA: 3'- -GGCU---UCaCaaUGGGCG---UCCGCUGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 54489 | 0.74 | 0.359272 |
Target: 5'- gCCGAGG-GUcAUCgGCGGGCauGGCGGCg -3' miRNA: 3'- -GGCUUCaCAaUGGgCGUCCG--CUGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 54182 | 0.73 | 0.402369 |
Target: 5'- uUGAucuuGGUG--GCCCuCAGGCGGCGGCc -3' miRNA: 3'- gGCU----UCACaaUGGGcGUCCGCUGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 32895 | 0.73 | 0.411374 |
Target: 5'- aCCGggGgcgaggGUgagccacccgGCCCGCucGGGCG-CGGCg -3' miRNA: 3'- -GGCuuCa-----CAa---------UGGGCG--UCCGCuGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 55041 | 0.72 | 0.445748 |
Target: 5'- gCCGAGGUGcUUGCCuCGguGGCaGucugcgcgagaucaGCGGCu -3' miRNA: 3'- -GGCUUCAC-AAUGG-GCguCCG-C--------------UGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 2129 | 0.72 | 0.457237 |
Target: 5'- gCCGAGGUcacgcagACCCGCAcGGUGcuggccaGCGGCg -3' miRNA: 3'- -GGCUUCAcaa----UGGGCGU-CCGC-------UGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 17472 | 0.72 | 0.467907 |
Target: 5'- aCCGuGGUGacGCCCggccauGCGGGCaagGACGGCg -3' miRNA: 3'- -GGCuUCACaaUGGG------CGUCCG---CUGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 23632 | 0.79 | 0.179029 |
Target: 5'- aCGGcucGGUGUgguuucgGCCCGCcgacGGCGACGGCu -3' miRNA: 3'- gGCU---UCACAa------UGGGCGu---CCGCUGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 51652 | 0.7 | 0.58048 |
Target: 5'- gCGAAcggGUUGCCgCGCGGGCGcguCGGg -3' miRNA: 3'- gGCUUca-CAAUGG-GCGUCCGCu--GCCg -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 68572 | 0.69 | 0.612403 |
Target: 5'- aCCGAGGUGgacCUCGUAucCGGCGGCc -3' miRNA: 3'- -GGCUUCACaauGGGCGUccGCUGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 64498 | 0.69 | 0.623088 |
Target: 5'- aCGGgucAG-GUUAUCCGCAcGGCGuGCGGUc -3' miRNA: 3'- gGCU---UCaCAAUGGGCGU-CCGC-UGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 905 | 0.69 | 0.630572 |
Target: 5'- aCCGAGGUGgUGCCCggcgaucaccugcuGCuGcGCGACaGCg -3' miRNA: 3'- -GGCUUCACaAUGGG--------------CGuC-CGCUGcCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 47475 | 0.69 | 0.642333 |
Target: 5'- aCCGAGGUGaucgcgucaCCG-AGGCG-CGGCa -3' miRNA: 3'- -GGCUUCACaaug-----GGCgUCCGCuGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 50070 | 0.69 | 0.65515 |
Target: 5'- aCGggGUGUagACCUGCGGcagcucgcCGAUGGUg -3' miRNA: 3'- gGCuuCACAa-UGGGCGUCc-------GCUGCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 63862 | 0.69 | 0.65515 |
Target: 5'- gCGAGGUGgccgGCUgGCcuuGCGugGGCg -3' miRNA: 3'- gGCUUCACaa--UGGgCGuc-CGCugCCG- -5' |
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23498 | 3' | -55.2 | NC_005259.1 | + | 60626 | 0.69 | 0.66581 |
Target: 5'- gCGAGGUGUggaacUGCgCGUAGuuCGACGGUg -3' miRNA: 3'- gGCUUCACA-----AUGgGCGUCc-GCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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