miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 5' -51.7 NC_005259.1 + 20169 0.67 0.891252
Target:  5'- cCACCG-CGCccgccgccucgGCUGACGAGAuCGCCg -3'
miRNA:   3'- aGUGGCaGCG-----------UGGUUGUUCUuGUGGa -5'
23498 5' -51.7 NC_005259.1 + 45633 0.67 0.891252
Target:  5'- -gGCCGggcagCGCGCCGgugccGCcguGAACACCg -3'
miRNA:   3'- agUGGCa----GCGUGGU-----UGuu-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 14852 0.67 0.891252
Target:  5'- aCACgGUCGUGCUcGCGAGGuucGCGCUg -3'
miRNA:   3'- aGUGgCAGCGUGGuUGUUCU---UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 9967 0.67 0.891252
Target:  5'- cCGCCcgaccacCGCACCGGuCGAGGugGCCa -3'
miRNA:   3'- aGUGGca-----GCGUGGUU-GUUCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 12214 0.67 0.891252
Target:  5'- gCACCGgCGCACCGcccgcuggccggGCAAuGGucACACCg -3'
miRNA:   3'- aGUGGCaGCGUGGU------------UGUU-CU--UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 47292 0.67 0.876132
Target:  5'- cCGCCGUCGC-CgGACAGcGACcCCUu -3'
miRNA:   3'- aGUGGCAGCGuGgUUGUUcUUGuGGA- -5'
23498 5' -51.7 NC_005259.1 + 52792 0.67 0.876132
Target:  5'- -uGCCGUCGacagcaCACCGACGAGAu--CCg -3'
miRNA:   3'- agUGGCAGC------GUGGUUGUUCUuguGGa -5'
23498 5' -51.7 NC_005259.1 + 51760 0.67 0.876132
Target:  5'- gCAgCGUUGCGCuCGGC--GAGCGCCUu -3'
miRNA:   3'- aGUgGCAGCGUG-GUUGuuCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 61270 0.67 0.876132
Target:  5'- -gACCGUCGCuggucucgauGCCGACGAacgcGAGCGgCUg -3'
miRNA:   3'- agUGGCAGCG----------UGGUUGUU----CUUGUgGA- -5'
23498 5' -51.7 NC_005259.1 + 3688 0.67 0.868183
Target:  5'- gUCACCGcCGC-CCAGCuuGAGAccgGCgACCUc -3'
miRNA:   3'- -AGUGGCaGCGuGGUUG--UUCU---UG-UGGA- -5'
23498 5' -51.7 NC_005259.1 + 52594 0.67 0.868183
Target:  5'- gUCGCCGa-GCACCAGCGccguacGGugGCCa -3'
miRNA:   3'- -AGUGGCagCGUGGUUGUu-----CUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 25283 0.67 0.868183
Target:  5'- cCACCGU-GCA-CGACAAGGACGgCa -3'
miRNA:   3'- aGUGGCAgCGUgGUUGUUCUUGUgGa -5'
23498 5' -51.7 NC_005259.1 + 46759 0.67 0.868183
Target:  5'- gCGCCGacaccUGCGCCGACAGccGCGCCc -3'
miRNA:   3'- aGUGGCa----GCGUGGUUGUUcuUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 42985 0.67 0.868183
Target:  5'- aUCAUCGUUGcCGCCccgccgaacaggGACGAGAACaaACCg -3'
miRNA:   3'- -AGUGGCAGC-GUGG------------UUGUUCUUG--UGGa -5'
23498 5' -51.7 NC_005259.1 + 55582 0.67 0.868183
Target:  5'- aUCACCGcCGCGCUGGCcacgcGAUACCa -3'
miRNA:   3'- -AGUGGCaGCGUGGUUGuuc--UUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 43782 0.68 0.859983
Target:  5'- cUCGCCGg-GCAUgAGCAGcgcGGGCACCg -3'
miRNA:   3'- -AGUGGCagCGUGgUUGUU---CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 4817 0.68 0.859983
Target:  5'- cCAgaCGUUGCGCCGACAgaccgacaugAGAAuCACCa -3'
miRNA:   3'- aGUg-GCAGCGUGGUUGU----------UCUU-GUGGa -5'
23498 5' -51.7 NC_005259.1 + 2683 0.68 0.859983
Target:  5'- cUCGCCGgucCGCAUCGaggACAAGGACgguuucACCg -3'
miRNA:   3'- -AGUGGCa--GCGUGGU---UGUUCUUG------UGGa -5'
23498 5' -51.7 NC_005259.1 + 24825 0.68 0.856635
Target:  5'- aCGCCGUgccCGCACCGAcCAAGcaguccgugcgcuACGCCg -3'
miRNA:   3'- aGUGGCA---GCGUGGUU-GUUCu------------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 66214 0.68 0.85154
Target:  5'- gCGCgGUCGCGCCGACGc--ACACg- -3'
miRNA:   3'- aGUGgCAGCGUGGUUGUucuUGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.