miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 5' -51.7 NC_005259.1 + 12214 0.67 0.891252
Target:  5'- gCACCGgCGCACCGcccgcuggccggGCAAuGGucACACCg -3'
miRNA:   3'- aGUGGCaGCGUGGU------------UGUU-CU--UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 12290 0.66 0.924287
Target:  5'- aCGCCGcCGCGCCucgauGCGGGcAaugucggugcGCACCg -3'
miRNA:   3'- aGUGGCaGCGUGGu----UGUUC-U----------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 13239 0.7 0.73474
Target:  5'- cCACCGUgagggccgaGCACCcggcgguaGAUGAGAACACCUc -3'
miRNA:   3'- aGUGGCAg--------CGUGG--------UUGUUCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 13807 0.69 0.776343
Target:  5'- aUCACCGgcgaGCACCAcguguGCGuGAugACCg -3'
miRNA:   3'- -AGUGGCag--CGUGGU-----UGUuCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 14852 0.67 0.891252
Target:  5'- aCACgGUCGUGCUcGCGAGGuucGCGCUg -3'
miRNA:   3'- aGUGgCAGCGUGGuUGUUCU---UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 16375 0.73 0.569668
Target:  5'- -uGCCGcUGCGCCGACGAGcuccACACCa -3'
miRNA:   3'- agUGGCaGCGUGGUUGUUCu---UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 17559 0.69 0.796277
Target:  5'- uUCACCGU-GC-CCGACGAGAuccucccgACGCUg -3'
miRNA:   3'- -AGUGGCAgCGuGGUUGUUCU--------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 17670 0.7 0.745328
Target:  5'- cCGCCGUCGacuCGCCc-CGAGggUGCCUa -3'
miRNA:   3'- aGUGGCAGC---GUGGuuGUUCuuGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 17764 0.74 0.526285
Target:  5'- cCGCCG-CGCGCCGGgcCGAGcGCACCg -3'
miRNA:   3'- aGUGGCaGCGUGGUU--GUUCuUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 17898 0.68 0.833959
Target:  5'- gCACCG-CGCGCCGauGCGuguGGAUGCCc -3'
miRNA:   3'- aGUGGCaGCGUGGU--UGUu--CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 18051 0.7 0.722972
Target:  5'- -aGCCGUUugagGCGuggaucuCCGACAAGGGCACCa -3'
miRNA:   3'- agUGGCAG----CGU-------GGUUGUUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 18106 0.68 0.85154
Target:  5'- -aGCCGUCGCGCuCAucgacuACGAGGGCAa-- -3'
miRNA:   3'- agUGGCAGCGUG-GU------UGUUCUUGUgga -5'
23498 5' -51.7 NC_005259.1 + 18477 0.69 0.796277
Target:  5'- -aGCCGUgccCGaCGCCGACGAGcuACGCCg -3'
miRNA:   3'- agUGGCA---GC-GUGGUUGUUCu-UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 20169 0.67 0.891252
Target:  5'- cCACCG-CGCccgccgccucgGCUGACGAGAuCGCCg -3'
miRNA:   3'- aGUGGCaGCG-----------UGGUUGUUCUuGUGGa -5'
23498 5' -51.7 NC_005259.1 + 20777 0.72 0.602775
Target:  5'- cCACCGgguggCGCGucgaCAGCAAGAGcCACCUg -3'
miRNA:   3'- aGUGGCa----GCGUg---GUUGUUCUU-GUGGA- -5'
23498 5' -51.7 NC_005259.1 + 21167 0.66 0.918238
Target:  5'- gUCACCGaCGgcagucggguCAUCGGCGcGAGCACCa -3'
miRNA:   3'- -AGUGGCaGC----------GUGGUUGUuCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 22149 0.72 0.62499
Target:  5'- gCAUCGUgCGCGCCGAaauGGAugACCa -3'
miRNA:   3'- aGUGGCA-GCGUGGUUgu-UCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 22215 0.66 0.918238
Target:  5'- cCACCG-CGCACCGccGCGAG-GCugUc -3'
miRNA:   3'- aGUGGCaGCGUGGU--UGUUCuUGugGa -5'
23498 5' -51.7 NC_005259.1 + 22326 0.68 0.833959
Target:  5'- aCACCGaCGCACUGuucGCAGGAuuuacCGCCa -3'
miRNA:   3'- aGUGGCaGCGUGGU---UGUUCUu----GUGGa -5'
23498 5' -51.7 NC_005259.1 + 22524 0.67 0.898412
Target:  5'- gCACCGUCGCcggugauuuCCAGCAGuccGAccuCGCCg -3'
miRNA:   3'- aGUGGCAGCGu--------GGUUGUU---CUu--GUGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.