miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 5' -51.7 NC_005259.1 + 22698 0.71 0.68816
Target:  5'- cCGCCGUCGCcgucACCGGCucgaugagcuacgccGAGCGCCa -3'
miRNA:   3'- aGUGGCAGCG----UGGUUGuu-------------CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 24825 0.68 0.856635
Target:  5'- aCGCCGUgccCGCACCGAcCAAGcaguccgugcgcuACGCCg -3'
miRNA:   3'- aGUGGCA---GCGUGGUU-GUUCu------------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 25283 0.67 0.868183
Target:  5'- cCACCGU-GCA-CGACAAGGACGgCa -3'
miRNA:   3'- aGUGGCAgCGUgGUUGUUCUUGUgGa -5'
23498 5' -51.7 NC_005259.1 + 25342 0.68 0.833959
Target:  5'- cUCACUGU-GC-CCGAgcCGGGAACGCCg -3'
miRNA:   3'- -AGUGGCAgCGuGGUU--GUUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 25718 0.66 0.905299
Target:  5'- cUCGCUGUUggGUACCAACAaccacgaaGGGAcCGCCg -3'
miRNA:   3'- -AGUGGCAG--CGUGGUUGU--------UCUU-GUGGa -5'
23498 5' -51.7 NC_005259.1 + 26424 0.66 0.924287
Target:  5'- cCGCCGUagaaCGCACCGccgaGCGGGcGgGCCg -3'
miRNA:   3'- aGUGGCA----GCGUGGU----UGUUCuUgUGGa -5'
23498 5' -51.7 NC_005259.1 + 28765 0.7 0.724047
Target:  5'- -gAUCGUCGCcgguGCCGACGAGGuaccCGCCg -3'
miRNA:   3'- agUGGCAGCG----UGGUUGUUCUu---GUGGa -5'
23498 5' -51.7 NC_005259.1 + 29265 0.73 0.547841
Target:  5'- cCAUCGUcCGCGCCGuggACGAGAuCGCCa -3'
miRNA:   3'- aGUGGCA-GCGUGGU---UGUUCUuGUGGa -5'
23498 5' -51.7 NC_005259.1 + 29302 0.66 0.911908
Target:  5'- gCACUGUUuCACCAccACAAcAACACCa -3'
miRNA:   3'- aGUGGCAGcGUGGU--UGUUcUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 29360 0.67 0.9012
Target:  5'- cCGCCGUCgagGCACCcguCGAGGucuacccgccgaccuACACCg -3'
miRNA:   3'- aGUGGCAG---CGUGGuu-GUUCU---------------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 29997 0.68 0.85154
Target:  5'- gCACgGUgGuCACCAcgACAAGGugACCa -3'
miRNA:   3'- aGUGgCAgC-GUGGU--UGUUCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 30719 0.75 0.443801
Target:  5'- cCGCCGaCGCGCCGcACGAGcGAUACCUg -3'
miRNA:   3'- aGUGGCaGCGUGGU-UGUUC-UUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 30786 0.68 0.85154
Target:  5'- -uGCCGUuguucgCGUACC-GCcGGAACACCUg -3'
miRNA:   3'- agUGGCA------GCGUGGuUGuUCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 31889 0.67 0.898412
Target:  5'- cUCGCCGgucucaagGC-CCGGCGcGAGCGCCUc -3'
miRNA:   3'- -AGUGGCag------CGuGGUUGUuCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 36231 0.66 0.918238
Target:  5'- gCACC-UUG-GCCAGCGcGAGCGCCUg -3'
miRNA:   3'- aGUGGcAGCgUGGUUGUuCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 36877 0.76 0.433025
Target:  5'- gCACCGccCGCGCCGACGAcgccgguGAGCGCCc -3'
miRNA:   3'- aGUGGCa-GCGUGGUUGUU-------CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 36948 0.72 0.602775
Target:  5'- gUCACCGggGUGCCcGCGAGAcCGCCUc -3'
miRNA:   3'- -AGUGGCagCGUGGuUGUUCUuGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 37160 0.71 0.680457
Target:  5'- gUCACCGcCGCGCCcGCc--GACGCCg -3'
miRNA:   3'- -AGUGGCaGCGUGGuUGuucUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 39320 0.7 0.755799
Target:  5'- cCGCUGUCGCGCC-GCu-GGugACCg -3'
miRNA:   3'- aGUGGCAGCGUGGuUGuuCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 41713 0.69 0.776343
Target:  5'- -aGCCGcCGCauACCGGCGgcggggAGGACACCg -3'
miRNA:   3'- agUGGCaGCG--UGGUUGU------UCUUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.