miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 5' -51.7 NC_005259.1 + 18106 0.68 0.85154
Target:  5'- -aGCCGUCGCGCuCAucgacuACGAGGGCAa-- -3'
miRNA:   3'- agUGGCAGCGUG-GU------UGUUCUUGUgga -5'
23498 5' -51.7 NC_005259.1 + 66214 0.68 0.85154
Target:  5'- gCGCgGUCGCGCCGACGc--ACACg- -3'
miRNA:   3'- aGUGgCAGCGUGGUUGUucuUGUGga -5'
23498 5' -51.7 NC_005259.1 + 24825 0.68 0.856635
Target:  5'- aCGCCGUgccCGCACCGAcCAAGcaguccgugcgcuACGCCg -3'
miRNA:   3'- aGUGGCA---GCGUGGUU-GUUCu------------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 2683 0.68 0.859983
Target:  5'- cUCGCCGgucCGCAUCGaggACAAGGACgguuucACCg -3'
miRNA:   3'- -AGUGGCa--GCGUGGU---UGUUCUUG------UGGa -5'
23498 5' -51.7 NC_005259.1 + 4817 0.68 0.859983
Target:  5'- cCAgaCGUUGCGCCGACAgaccgacaugAGAAuCACCa -3'
miRNA:   3'- aGUg-GCAGCGUGGUUGU----------UCUU-GUGGa -5'
23498 5' -51.7 NC_005259.1 + 43782 0.68 0.859983
Target:  5'- cUCGCCGg-GCAUgAGCAGcgcGGGCACCg -3'
miRNA:   3'- -AGUGGCagCGUGgUUGUU---CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 17898 0.68 0.833959
Target:  5'- gCACCG-CGCGCCGauGCGuguGGAUGCCc -3'
miRNA:   3'- aGUGGCaGCGUGGU--UGUu--CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 51133 0.69 0.805987
Target:  5'- aUCACCGUCGgGgCGGCcauGAGCGCg- -3'
miRNA:   3'- -AGUGGCAGCgUgGUUGuu-CUUGUGga -5'
23498 5' -51.7 NC_005259.1 + 3564 0.69 0.805987
Target:  5'- cUUGCCGagcUCGcCGCCuACAAGGACAUCg -3'
miRNA:   3'- -AGUGGC---AGC-GUGGuUGUUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 18477 0.69 0.796277
Target:  5'- -aGCCGUgccCGaCGCCGACGAGcuACGCCg -3'
miRNA:   3'- agUGGCA---GC-GUGGUUGUUCu-UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 63850 0.69 0.796277
Target:  5'- -aAgCG-CGUACCGGCGAGGugGCCg -3'
miRNA:   3'- agUgGCaGCGUGGUUGUUCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 63562 0.69 0.796277
Target:  5'- cCACCGaCGCgACgAGCGGGAuauACGCCg -3'
miRNA:   3'- aGUGGCaGCG-UGgUUGUUCU---UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 17559 0.69 0.796277
Target:  5'- uUCACCGU-GC-CCGACGAGAuccucccgACGCUg -3'
miRNA:   3'- -AGUGGCAgCGuGGUUGUUCU--------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 41713 0.69 0.776343
Target:  5'- -aGCCGcCGCauACCGGCGgcggggAGGACACCg -3'
miRNA:   3'- agUGGCaGCG--UGGUUGU------UCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 13807 0.69 0.776343
Target:  5'- aUCACCGgcgaGCACCAcguguGCGuGAugACCg -3'
miRNA:   3'- -AGUGGCag--CGUGGU-----UGUuCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 1719 0.69 0.776343
Target:  5'- cUCGCCGagGUggaacgcaacaACCAACGAGAgaaagagaGCACCg -3'
miRNA:   3'- -AGUGGCagCG-----------UGGUUGUUCU--------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 61193 0.7 0.744275
Target:  5'- cUCGCCGgucugcUUGCACCAcaucGCAGGAagcggcggugugcGCACCg -3'
miRNA:   3'- -AGUGGC------AGCGUGGU----UGUUCU-------------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 3062 0.7 0.71326
Target:  5'- cUACCGUCGacgggccgagGCCGACAAGAGaGCCg -3'
miRNA:   3'- aGUGGCAGCg---------UGGUUGUUCUUgUGGa -5'
23498 5' -51.7 NC_005259.1 + 56677 0.7 0.71326
Target:  5'- -gGCuCGUUGCGCCAcccauacggcuGCGAGGugGCCa -3'
miRNA:   3'- agUG-GCAGCGUGGU-----------UGUUCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 18051 0.7 0.722972
Target:  5'- -aGCCGUUugagGCGuggaucuCCGACAAGGGCACCa -3'
miRNA:   3'- agUGGCAG----CGU-------GGUUGUUCUUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.