Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23498 | 5' | -51.7 | NC_005259.1 | + | 18477 | 0.69 | 0.796277 |
Target: 5'- -aGCCGUgccCGaCGCCGACGAGcuACGCCg -3' miRNA: 3'- agUGGCA---GC-GUGGUUGUUCu-UGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 63562 | 0.69 | 0.796277 |
Target: 5'- cCACCGaCGCgACgAGCGGGAuauACGCCg -3' miRNA: 3'- aGUGGCaGCG-UGgUUGUUCU---UGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 17559 | 0.69 | 0.796277 |
Target: 5'- uUCACCGU-GC-CCGACGAGAuccucccgACGCUg -3' miRNA: 3'- -AGUGGCAgCGuGGUUGUUCU--------UGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 41713 | 0.69 | 0.776343 |
Target: 5'- -aGCCGcCGCauACCGGCGgcggggAGGACACCg -3' miRNA: 3'- agUGGCaGCG--UGGUUGU------UCUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 13807 | 0.69 | 0.776343 |
Target: 5'- aUCACCGgcgaGCACCAcguguGCGuGAugACCg -3' miRNA: 3'- -AGUGGCag--CGUGGU-----UGUuCUugUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 1719 | 0.69 | 0.776343 |
Target: 5'- cUCGCCGagGUggaacgcaacaACCAACGAGAgaaagagaGCACCg -3' miRNA: 3'- -AGUGGCagCG-----------UGGUUGUUCU--------UGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 17898 | 0.68 | 0.833959 |
Target: 5'- gCACCG-CGCGCCGauGCGuguGGAUGCCc -3' miRNA: 3'- aGUGGCaGCGUGGU--UGUu--CUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 43782 | 0.68 | 0.859983 |
Target: 5'- cUCGCCGg-GCAUgAGCAGcgcGGGCACCg -3' miRNA: 3'- -AGUGGCagCGUGgUUGUU---CUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 4817 | 0.68 | 0.859983 |
Target: 5'- cCAgaCGUUGCGCCGACAgaccgacaugAGAAuCACCa -3' miRNA: 3'- aGUg-GCAGCGUGGUUGU----------UCUU-GUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 2683 | 0.68 | 0.859983 |
Target: 5'- cUCGCCGgucCGCAUCGaggACAAGGACgguuucACCg -3' miRNA: 3'- -AGUGGCa--GCGUGGU---UGUUCUUG------UGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 24825 | 0.68 | 0.856635 |
Target: 5'- aCGCCGUgccCGCACCGAcCAAGcaguccgugcgcuACGCCg -3' miRNA: 3'- aGUGGCA---GCGUGGUU-GUUCu------------UGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 66214 | 0.68 | 0.85154 |
Target: 5'- gCGCgGUCGCGCCGACGc--ACACg- -3' miRNA: 3'- aGUGgCAGCGUGGUUGUucuUGUGga -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 30786 | 0.68 | 0.85154 |
Target: 5'- -uGCCGUuguucgCGUACC-GCcGGAACACCUg -3' miRNA: 3'- agUGGCA------GCGUGGuUGuUCUUGUGGA- -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 29997 | 0.68 | 0.85154 |
Target: 5'- gCACgGUgGuCACCAcgACAAGGugACCa -3' miRNA: 3'- aGUGgCAgC-GUGGU--UGUUCUugUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 65380 | 0.68 | 0.842863 |
Target: 5'- cCACCGguaaGgGCaacgcaGACAAGGACACCg -3' miRNA: 3'- aGUGGCag--CgUGg-----UUGUUCUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 25342 | 0.68 | 0.833959 |
Target: 5'- cUCACUGU-GC-CCGAgcCGGGAACGCCg -3' miRNA: 3'- -AGUGGCAgCGuGGUU--GUUCUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 22326 | 0.68 | 0.833959 |
Target: 5'- aCACCGaCGCACUGuucGCAGGAuuuacCGCCa -3' miRNA: 3'- aGUGGCaGCGUGGU---UGUUCUu----GUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 18106 | 0.68 | 0.85154 |
Target: 5'- -aGCCGUCGCGCuCAucgacuACGAGGGCAa-- -3' miRNA: 3'- agUGGCAGCGUG-GU------UGUUCUUGUgga -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 45633 | 0.67 | 0.891252 |
Target: 5'- -gGCCGggcagCGCGCCGgugccGCcguGAACACCg -3' miRNA: 3'- agUGGCa----GCGUGGU-----UGuu-CUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 29360 | 0.67 | 0.9012 |
Target: 5'- cCGCCGUCgagGCACCcguCGAGGucuacccgccgaccuACACCg -3' miRNA: 3'- aGUGGCAG---CGUGGuu-GUUCU---------------UGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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