miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 5' -51.7 NC_005259.1 + 11012 0.71 0.680457
Target:  5'- gCGCCGgaCGCGCCGagGCAGGAGuuCGCCg -3'
miRNA:   3'- aGUGGCa-GCGUGGU--UGUUCUU--GUGGa -5'
23498 5' -51.7 NC_005259.1 + 37160 0.71 0.680457
Target:  5'- gUCACCGcCGCGCCcGCc--GACGCCg -3'
miRNA:   3'- -AGUGGCaGCGUGGuUGuucUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 45725 0.71 0.658334
Target:  5'- aUCGCCuG-CGCACCAcCGAGGccgcGCACCg -3'
miRNA:   3'- -AGUGG-CaGCGUGGUuGUUCU----UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 2499 0.71 0.658334
Target:  5'- gCACCGUCGuCACuCAGCAcgAGAcccaagccgACGCCa -3'
miRNA:   3'- aGUGGCAGC-GUG-GUUGU--UCU---------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 63682 0.71 0.658334
Target:  5'- gCACCGgCGCGCCGGgGAucuGCGCCUg -3'
miRNA:   3'- aGUGGCaGCGUGGUUgUUcu-UGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 22698 0.71 0.68816
Target:  5'- cCGCCGUCGCcgucACCGGCucgaugagcuacgccGAGCGCCa -3'
miRNA:   3'- aGUGGCAGCG----UGGUUGuu-------------CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 13239 0.7 0.73474
Target:  5'- cCACCGUgagggccgaGCACCcggcgguaGAUGAGAACACCUc -3'
miRNA:   3'- aGUGGCAg--------CGUGG--------UUGUUCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 7638 0.7 0.766141
Target:  5'- aCACCGUCGCcgaguucgaccGCCGucguCGuGAGCGCCc -3'
miRNA:   3'- aGUGGCAGCG-----------UGGUu---GUuCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 39320 0.7 0.755799
Target:  5'- cCGCUGUCGCGCC-GCu-GGugACCg -3'
miRNA:   3'- aGUGGCAGCGUGGuUGuuCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 17670 0.7 0.745328
Target:  5'- cCGCCGUCGacuCGCCc-CGAGggUGCCUa -3'
miRNA:   3'- aGUGGCAGC---GUGGuuGUUCuuGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 61193 0.7 0.744275
Target:  5'- cUCGCCGgucugcUUGCACCAcaucGCAGGAagcggcggugugcGCACCg -3'
miRNA:   3'- -AGUGGC------AGCGUGGU----UGUUCU-------------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 56574 0.7 0.73474
Target:  5'- -gAUCGUCGCGgCuGCGAuGAGCGCCUc -3'
miRNA:   3'- agUGGCAGCGUgGuUGUU-CUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 28765 0.7 0.724047
Target:  5'- -gAUCGUCGCcgguGCCGACGAGGuaccCGCCg -3'
miRNA:   3'- agUGGCAGCG----UGGUUGUUCUu---GUGGa -5'
23498 5' -51.7 NC_005259.1 + 61135 0.7 0.724047
Target:  5'- -uGCCGUucucgaucCGUGCCGACucAAGGACACCg -3'
miRNA:   3'- agUGGCA--------GCGUGGUUG--UUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 18051 0.7 0.722972
Target:  5'- -aGCCGUUugagGCGuggaucuCCGACAAGGGCACCa -3'
miRNA:   3'- agUGGCAG----CGU-------GGUUGUUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 56677 0.7 0.71326
Target:  5'- -gGCuCGUUGCGCCAcccauacggcuGCGAGGugGCCa -3'
miRNA:   3'- agUG-GCAGCGUGGU-----------UGUUCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 3062 0.7 0.71326
Target:  5'- cUACCGUCGacgggccgagGCCGACAAGAGaGCCg -3'
miRNA:   3'- aGUGGCAGCg---------UGGUUGUUCUUgUGGa -5'
23498 5' -51.7 NC_005259.1 + 1719 0.69 0.776343
Target:  5'- cUCGCCGagGUggaacgcaacaACCAACGAGAgaaagagaGCACCg -3'
miRNA:   3'- -AGUGGCagCG-----------UGGUUGUUCU--------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 13807 0.69 0.776343
Target:  5'- aUCACCGgcgaGCACCAcguguGCGuGAugACCg -3'
miRNA:   3'- -AGUGGCag--CGUGGU-----UGUuCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 41713 0.69 0.776343
Target:  5'- -aGCCGcCGCauACCGGCGgcggggAGGACACCg -3'
miRNA:   3'- agUGGCaGCG--UGGUUGU------UCUUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.