miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 5' -51.7 NC_005259.1 + 2750 0.66 0.905299
Target:  5'- gUCGCCGUCGUGCaguACGAc--CACCUc -3'
miRNA:   3'- -AGUGGCAGCGUGgu-UGUUcuuGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 29360 0.67 0.9012
Target:  5'- cCGCCGUCgagGCACCcguCGAGGucuacccgccgaccuACACCg -3'
miRNA:   3'- aGUGGCAG---CGUGGuu-GUUCU---------------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 22524 0.67 0.898412
Target:  5'- gCACCGUCGCcggugauuuCCAGCAGuccGAccuCGCCg -3'
miRNA:   3'- aGUGGCAGCGu--------GGUUGUU---CUu--GUGGa -5'
23498 5' -51.7 NC_005259.1 + 46885 0.67 0.898412
Target:  5'- gCGCCGcCGC-CCG-CGAuGAGCGCCc -3'
miRNA:   3'- aGUGGCaGCGuGGUuGUU-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 31889 0.67 0.898412
Target:  5'- cUCGCCGgucucaagGC-CCGGCGcGAGCGCCUc -3'
miRNA:   3'- -AGUGGCag------CGuGGUUGUuCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 45633 0.67 0.891252
Target:  5'- -gGCCGggcagCGCGCCGgugccGCcguGAACACCg -3'
miRNA:   3'- agUGGCa----GCGUGGU-----UGuu-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 20169 0.67 0.891252
Target:  5'- cCACCG-CGCccgccgccucgGCUGACGAGAuCGCCg -3'
miRNA:   3'- aGUGGCaGCG-----------UGGUUGUUCUuGUGGa -5'
23498 5' -51.7 NC_005259.1 + 20777 0.72 0.602775
Target:  5'- cCACCGgguggCGCGucgaCAGCAAGAGcCACCUg -3'
miRNA:   3'- aGUGGCa----GCGUg---GUUGUUCUU-GUGGA- -5'
23498 5' -51.7 NC_005259.1 + 5926 0.71 0.691453
Target:  5'- gCACCGUCG-ACCGuaaGgGAGAACGCUa -3'
miRNA:   3'- aGUGGCAGCgUGGU---UgUUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 22698 0.71 0.68816
Target:  5'- cCGCCGUCGCcgucACCGGCucgaugagcuacgccGAGCGCCa -3'
miRNA:   3'- aGUGGCAGCG----UGGUUGuu-------------CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 11012 0.71 0.680457
Target:  5'- gCGCCGgaCGCGCCGagGCAGGAGuuCGCCg -3'
miRNA:   3'- aGUGGCa-GCGUGGU--UGUUCUU--GUGGa -5'
23498 5' -51.7 NC_005259.1 + 37160 0.71 0.680457
Target:  5'- gUCACCGcCGCGCCcGCc--GACGCCg -3'
miRNA:   3'- -AGUGGCaGCGUGGuUGuucUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 45725 0.71 0.658334
Target:  5'- aUCGCCuG-CGCACCAcCGAGGccgcGCACCg -3'
miRNA:   3'- -AGUGG-CaGCGUGGUuGUUCU----UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 2499 0.71 0.658334
Target:  5'- gCACCGUCGuCACuCAGCAcgAGAcccaagccgACGCCa -3'
miRNA:   3'- aGUGGCAGC-GUG-GUUGU--UCU---------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 63682 0.71 0.658334
Target:  5'- gCACCGgCGCGCCGGgGAucuGCGCCUg -3'
miRNA:   3'- aGUGGCaGCGUGGUUgUUcu-UGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 22149 0.72 0.62499
Target:  5'- gCAUCGUgCGCGCCGAaauGGAugACCa -3'
miRNA:   3'- aGUGGCA-GCGUGGUUgu-UCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 44650 0.72 0.62499
Target:  5'- -uGCCGcCGC-CCGACucGAACGCCa -3'
miRNA:   3'- agUGGCaGCGuGGUUGuuCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 64682 0.72 0.602775
Target:  5'- gCACCGcCGCGCCGcCGAGcGAUACCc -3'
miRNA:   3'- aGUGGCaGCGUGGUuGUUC-UUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 36948 0.72 0.602775
Target:  5'- gUCACCGggGUGCCcGCGAGAcCGCCUc -3'
miRNA:   3'- -AGUGGCagCGUGGuUGUUCUuGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 6444 0.71 0.691453
Target:  5'- gCACCGUCGCGCUgaucGGCAGcguCGCCg -3'
miRNA:   3'- aGUGGCAGCGUGG----UUGUUcuuGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.