Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23498 | 5' | -51.7 | NC_005259.1 | + | 17764 | 0.74 | 0.526285 |
Target: 5'- cCGCCG-CGCGCCGGgcCGAGcGCACCg -3' miRNA: 3'- aGUGGCaGCGUGGUU--GUUCuUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 47489 | 0.74 | 0.494579 |
Target: 5'- gUCACCGagGCG-CGGCAGGAACACgCUg -3' miRNA: 3'- -AGUGGCagCGUgGUUGUUCUUGUG-GA- -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 3853 | 0.75 | 0.453727 |
Target: 5'- gCACCGUCGaCGCCGGuc-GAGCGCCUc -3' miRNA: 3'- aGUGGCAGC-GUGGUUguuCUUGUGGA- -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 30719 | 0.75 | 0.443801 |
Target: 5'- cCGCCGaCGCGCCGcACGAGcGAUACCUg -3' miRNA: 3'- aGUGGCaGCGUGGU-UGUUC-UUGUGGA- -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 36877 | 0.76 | 0.433025 |
Target: 5'- gCACCGccCGCGCCGACGAcgccgguGAGCGCCc -3' miRNA: 3'- aGUGGCa-GCGUGGUUGUU-------CUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 44650 | 0.72 | 0.62499 |
Target: 5'- -uGCCGcCGC-CCGACucGAACGCCa -3' miRNA: 3'- agUGGCaGCGuGGUUGuuCUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 22149 | 0.72 | 0.62499 |
Target: 5'- gCAUCGUgCGCGCCGAaauGGAugACCa -3' miRNA: 3'- aGUGGCA-GCGUGGUUgu-UCUugUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 18051 | 0.7 | 0.722972 |
Target: 5'- -aGCCGUUugagGCGuggaucuCCGACAAGGGCACCa -3' miRNA: 3'- agUGGCAG----CGU-------GGUUGUUCUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 56677 | 0.7 | 0.71326 |
Target: 5'- -gGCuCGUUGCGCCAcccauacggcuGCGAGGugGCCa -3' miRNA: 3'- agUG-GCAGCGUGGU-----------UGUUCUugUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 3062 | 0.7 | 0.71326 |
Target: 5'- cUACCGUCGacgggccgagGCCGACAAGAGaGCCg -3' miRNA: 3'- aGUGGCAGCg---------UGGUUGUUCUUgUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 6219 | 0.71 | 0.691453 |
Target: 5'- -aGCCGcCGCGCCGACAccGugACCg -3' miRNA: 3'- agUGGCaGCGUGGUUGUucUugUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 65121 | 0.71 | 0.691453 |
Target: 5'- gUCACCGUcggCGCACCGGCGGc--CACCc -3' miRNA: 3'- -AGUGGCA---GCGUGGUUGUUcuuGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 6444 | 0.71 | 0.691453 |
Target: 5'- gCACCGUCGCGCUgaucGGCAGcguCGCCg -3' miRNA: 3'- aGUGGCAGCGUGG----UUGUUcuuGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 5926 | 0.71 | 0.691453 |
Target: 5'- gCACCGUCG-ACCGuaaGgGAGAACGCUa -3' miRNA: 3'- aGUGGCAGCgUGGU---UgUUCUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 22698 | 0.71 | 0.68816 |
Target: 5'- cCGCCGUCGCcgucACCGGCucgaugagcuacgccGAGCGCCa -3' miRNA: 3'- aGUGGCAGCG----UGGUUGuu-------------CUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 11012 | 0.71 | 0.680457 |
Target: 5'- gCGCCGgaCGCGCCGagGCAGGAGuuCGCCg -3' miRNA: 3'- aGUGGCa-GCGUGGU--UGUUCUU--GUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 37160 | 0.71 | 0.680457 |
Target: 5'- gUCACCGcCGCGCCcGCc--GACGCCg -3' miRNA: 3'- -AGUGGCaGCGUGGuUGuucUUGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 45725 | 0.71 | 0.658334 |
Target: 5'- aUCGCCuG-CGCACCAcCGAGGccgcGCACCg -3' miRNA: 3'- -AGUGG-CaGCGUGGUuGUUCU----UGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 2499 | 0.71 | 0.658334 |
Target: 5'- gCACCGUCGuCACuCAGCAcgAGAcccaagccgACGCCa -3' miRNA: 3'- aGUGGCAGC-GUG-GUUGU--UCU---------UGUGGa -5' |
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23498 | 5' | -51.7 | NC_005259.1 | + | 63682 | 0.71 | 0.658334 |
Target: 5'- gCACCGgCGCGCCGGgGAucuGCGCCUg -3' miRNA: 3'- aGUGGCaGCGUGGUUgUUcu-UGUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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