miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 5' -51.7 NC_005259.1 + 1262 0.66 0.924287
Target:  5'- aUCACC-UCGgAUC-ACGAGAACGuCCUg -3'
miRNA:   3'- -AGUGGcAGCgUGGuUGUUCUUGU-GGA- -5'
23498 5' -51.7 NC_005259.1 + 1719 0.69 0.776343
Target:  5'- cUCGCCGagGUggaacgcaacaACCAACGAGAgaaagagaGCACCg -3'
miRNA:   3'- -AGUGGCagCG-----------UGGUUGUUCU--------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 2499 0.71 0.658334
Target:  5'- gCACCGUCGuCACuCAGCAcgAGAcccaagccgACGCCa -3'
miRNA:   3'- aGUGGCAGC-GUG-GUUGU--UCU---------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 2683 0.68 0.859983
Target:  5'- cUCGCCGgucCGCAUCGaggACAAGGACgguuucACCg -3'
miRNA:   3'- -AGUGGCa--GCGUGGU---UGUUCUUG------UGGa -5'
23498 5' -51.7 NC_005259.1 + 2750 0.66 0.905299
Target:  5'- gUCGCCGUCGUGCaguACGAc--CACCUc -3'
miRNA:   3'- -AGUGGCAGCGUGgu-UGUUcuuGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 3062 0.7 0.71326
Target:  5'- cUACCGUCGacgggccgagGCCGACAAGAGaGCCg -3'
miRNA:   3'- aGUGGCAGCg---------UGGUUGUUCUUgUGGa -5'
23498 5' -51.7 NC_005259.1 + 3564 0.69 0.805987
Target:  5'- cUUGCCGagcUCGcCGCCuACAAGGACAUCg -3'
miRNA:   3'- -AGUGGC---AGC-GUGGuUGUUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 3688 0.67 0.868183
Target:  5'- gUCACCGcCGC-CCAGCuuGAGAccgGCgACCUc -3'
miRNA:   3'- -AGUGGCaGCGuGGUUG--UUCU---UG-UGGA- -5'
23498 5' -51.7 NC_005259.1 + 3853 0.75 0.453727
Target:  5'- gCACCGUCGaCGCCGGuc-GAGCGCCUc -3'
miRNA:   3'- aGUGGCAGC-GUGGUUguuCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 4817 0.68 0.859983
Target:  5'- cCAgaCGUUGCGCCGACAgaccgacaugAGAAuCACCa -3'
miRNA:   3'- aGUg-GCAGCGUGGUUGU----------UCUU-GUGGa -5'
23498 5' -51.7 NC_005259.1 + 5926 0.71 0.691453
Target:  5'- gCACCGUCG-ACCGuaaGgGAGAACGCUa -3'
miRNA:   3'- aGUGGCAGCgUGGU---UgUUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 6219 0.71 0.691453
Target:  5'- -aGCCGcCGCGCCGACAccGugACCg -3'
miRNA:   3'- agUGGCaGCGUGGUUGUucUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 6444 0.71 0.691453
Target:  5'- gCACCGUCGCGCUgaucGGCAGcguCGCCg -3'
miRNA:   3'- aGUGGCAGCGUGG----UUGUUcuuGUGGa -5'
23498 5' -51.7 NC_005259.1 + 7421 0.66 0.918238
Target:  5'- gUCGCCGUcggcggugccCGCGCCG-CAuGGcAGCGCCg -3'
miRNA:   3'- -AGUGGCA----------GCGUGGUuGU-UC-UUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 7638 0.7 0.766141
Target:  5'- aCACCGUCGCcgaguucgaccGCCGucguCGuGAGCGCCc -3'
miRNA:   3'- aGUGGCAGCG-----------UGGUu---GUuCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 8057 0.66 0.92949
Target:  5'- cCGCCgGUCGcCGCCGACAucgAGAucgugccGCGCUg -3'
miRNA:   3'- aGUGG-CAGC-GUGGUUGU---UCU-------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 8944 0.73 0.591701
Target:  5'- aUCACgGUgggCGCGCCGugGAcGGGCACCg -3'
miRNA:   3'- -AGUGgCA---GCGUGGUugUU-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 9603 0.73 0.591701
Target:  5'- -gGCCGUagaGCACCGugGCAucGAACACCg -3'
miRNA:   3'- agUGGCAg--CGUGGU--UGUu-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 9967 0.67 0.891252
Target:  5'- cCGCCcgaccacCGCACCGGuCGAGGugGCCa -3'
miRNA:   3'- aGUGGca-----GCGUGGUU-GUUCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 11012 0.71 0.680457
Target:  5'- gCGCCGgaCGCGCCGagGCAGGAGuuCGCCg -3'
miRNA:   3'- aGUGGCa-GCGUGGU--UGUUCUU--GUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.