miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 5' -51.7 NC_005259.1 + 1262 0.66 0.924287
Target:  5'- aUCACC-UCGgAUC-ACGAGAACGuCCUg -3'
miRNA:   3'- -AGUGGcAGCgUGGuUGUUCUUGU-GGA- -5'
23498 5' -51.7 NC_005259.1 + 21167 0.66 0.918238
Target:  5'- gUCACCGaCGgcagucggguCAUCGGCGcGAGCACCa -3'
miRNA:   3'- -AGUGGCaGC----------GUGGUUGUuCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 12290 0.66 0.924287
Target:  5'- aCGCCGcCGCGCCucgauGCGGGcAaugucggugcGCACCg -3'
miRNA:   3'- aGUGGCaGCGUGGu----UGUUC-U----------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 7421 0.66 0.918238
Target:  5'- gUCGCCGUcggcggugccCGCGCCG-CAuGGcAGCGCCg -3'
miRNA:   3'- -AGUGGCA----------GCGUGGUuGU-UC-UUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 63636 0.66 0.924287
Target:  5'- aUCAUCGUgGCgagcugcucGCUGGCcGGGACGCCg -3'
miRNA:   3'- -AGUGGCAgCG---------UGGUUGuUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 36231 0.66 0.918238
Target:  5'- gCACC-UUG-GCCAGCGcGAGCGCCUg -3'
miRNA:   3'- aGUGGcAGCgUGGUUGUuCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 25718 0.66 0.905299
Target:  5'- cUCGCUGUUggGUACCAACAaccacgaaGGGAcCGCCg -3'
miRNA:   3'- -AGUGGCAG--CGUGGUUGU--------UCUU-GUGGa -5'
23498 5' -51.7 NC_005259.1 + 26424 0.66 0.924287
Target:  5'- cCGCCGUagaaCGCACCGccgaGCGGGcGgGCCg -3'
miRNA:   3'- aGUGGCA----GCGUGGU----UGUUCuUgUGGa -5'
23498 5' -51.7 NC_005259.1 + 2750 0.66 0.905299
Target:  5'- gUCGCCGUCGUGCaguACGAc--CACCUc -3'
miRNA:   3'- -AGUGGCAGCGUGgu-UGUUcuuGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 45534 0.66 0.905299
Target:  5'- cCGCCGUgGCugCgAGCGGGuugcuCGCCg -3'
miRNA:   3'- aGUGGCAgCGugG-UUGUUCuu---GUGGa -5'
23498 5' -51.7 NC_005259.1 + 22215 0.66 0.918238
Target:  5'- cCACCG-CGCACCGccGCGAG-GCugUc -3'
miRNA:   3'- aGUGGCaGCGUGGU--UGUUCuUGugGa -5'
23498 5' -51.7 NC_005259.1 + 65543 0.66 0.905299
Target:  5'- -gACCGagGUACuCGACAAGAucggcccauagACACCg -3'
miRNA:   3'- agUGGCagCGUG-GUUGUUCU-----------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 29302 0.66 0.911908
Target:  5'- gCACUGUUuCACCAccACAAcAACACCa -3'
miRNA:   3'- aGUGGCAGcGUGGU--UGUUcUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 8057 0.66 0.92949
Target:  5'- cCGCCgGUCGcCGCCGACAucgAGAucgugccGCGCUg -3'
miRNA:   3'- aGUGG-CAGC-GUGGUUGU---UCU-------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 42193 0.66 0.930054
Target:  5'- cCGCUG-CGCGCCGucGCGAuGGAUGCCc -3'
miRNA:   3'- aGUGGCaGCGUGGU--UGUU-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 44007 0.66 0.922502
Target:  5'- aCACUGUCcuugagcguuucgaGCGCgGACu-GAACACCg -3'
miRNA:   3'- aGUGGCAG--------------CGUGgUUGuuCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 51760 0.67 0.876132
Target:  5'- gCAgCGUUGCGCuCGGC--GAGCGCCUu -3'
miRNA:   3'- aGUgGCAGCGUG-GUUGuuCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 46885 0.67 0.898412
Target:  5'- gCGCCGcCGC-CCG-CGAuGAGCGCCc -3'
miRNA:   3'- aGUGGCaGCGuGGUuGUU-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 22524 0.67 0.898412
Target:  5'- gCACCGUCGCcggugauuuCCAGCAGuccGAccuCGCCg -3'
miRNA:   3'- aGUGGCAGCGu--------GGUUGUU---CUu--GUGGa -5'
23498 5' -51.7 NC_005259.1 + 29360 0.67 0.9012
Target:  5'- cCGCCGUCgagGCACCcguCGAGGucuacccgccgaccuACACCg -3'
miRNA:   3'- aGUGGCAG---CGUGGuu-GUUCU---------------UGUGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.