miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 5' -51.7 NC_005259.1 + 59602 0.77 0.37795
Target:  5'- cUCACgGUCcCGCCGACAGGAcagGCACCc -3'
miRNA:   3'- -AGUGgCAGcGUGGUUGUUCU---UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 36877 0.76 0.433025
Target:  5'- gCACCGccCGCGCCGACGAcgccgguGAGCGCCc -3'
miRNA:   3'- aGUGGCa-GCGUGGUUGUU-------CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 30719 0.75 0.443801
Target:  5'- cCGCCGaCGCGCCGcACGAGcGAUACCUg -3'
miRNA:   3'- aGUGGCaGCGUGGU-UGUUC-UUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 3853 0.75 0.453727
Target:  5'- gCACCGUCGaCGCCGGuc-GAGCGCCUc -3'
miRNA:   3'- aGUGGCAGC-GUGGUUguuCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 47489 0.74 0.494579
Target:  5'- gUCACCGagGCG-CGGCAGGAACACgCUg -3'
miRNA:   3'- -AGUGGCagCGUgGUUGUUCUUGUG-GA- -5'
23498 5' -51.7 NC_005259.1 + 17764 0.74 0.526285
Target:  5'- cCGCCG-CGCGCCGGgcCGAGcGCACCg -3'
miRNA:   3'- aGUGGCaGCGUGGUU--GUUCuUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 29265 0.73 0.547841
Target:  5'- cCAUCGUcCGCGCCGuggACGAGAuCGCCa -3'
miRNA:   3'- aGUGGCA-GCGUGGU---UGUUCUuGUGGa -5'
23498 5' -51.7 NC_005259.1 + 16375 0.73 0.569668
Target:  5'- -uGCCGcUGCGCCGACGAGcuccACACCa -3'
miRNA:   3'- agUGGCaGCGUGGUUGUUCu---UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 52135 0.73 0.590596
Target:  5'- cCGCCGUCcgGCACCucgccgaGGCAGGcAGCGCCg -3'
miRNA:   3'- aGUGGCAG--CGUGG-------UUGUUC-UUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 9603 0.73 0.591701
Target:  5'- -gGCCGUagaGCACCGugGCAucGAACACCg -3'
miRNA:   3'- agUGGCAg--CGUGGU--UGUu-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 8944 0.73 0.591701
Target:  5'- aUCACgGUgggCGCGCCGugGAcGGGCACCg -3'
miRNA:   3'- -AGUGgCA---GCGUGGUugUU-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 20777 0.72 0.602775
Target:  5'- cCACCGgguggCGCGucgaCAGCAAGAGcCACCUg -3'
miRNA:   3'- aGUGGCa----GCGUg---GUUGUUCUU-GUGGA- -5'
23498 5' -51.7 NC_005259.1 + 36948 0.72 0.602775
Target:  5'- gUCACCGggGUGCCcGCGAGAcCGCCUc -3'
miRNA:   3'- -AGUGGCagCGUGGuUGUUCUuGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 64682 0.72 0.602775
Target:  5'- gCACCGcCGCGCCGcCGAGcGAUACCc -3'
miRNA:   3'- aGUGGCaGCGUGGUuGUUC-UUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 22149 0.72 0.62499
Target:  5'- gCAUCGUgCGCGCCGAaauGGAugACCa -3'
miRNA:   3'- aGUGGCA-GCGUGGUUgu-UCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 44650 0.72 0.62499
Target:  5'- -uGCCGcCGC-CCGACucGAACGCCa -3'
miRNA:   3'- agUGGCaGCGuGGUUGuuCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 63682 0.71 0.658334
Target:  5'- gCACCGgCGCGCCGGgGAucuGCGCCUg -3'
miRNA:   3'- aGUGGCaGCGUGGUUgUUcu-UGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 2499 0.71 0.658334
Target:  5'- gCACCGUCGuCACuCAGCAcgAGAcccaagccgACGCCa -3'
miRNA:   3'- aGUGGCAGC-GUG-GUUGU--UCU---------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 45725 0.71 0.658334
Target:  5'- aUCGCCuG-CGCACCAcCGAGGccgcGCACCg -3'
miRNA:   3'- -AGUGG-CaGCGUGGUuGUUCU----UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 11012 0.71 0.680457
Target:  5'- gCGCCGgaCGCGCCGagGCAGGAGuuCGCCg -3'
miRNA:   3'- aGUGGCa-GCGUGGU--UGUUCUU--GUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.