miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 5' -51.7 NC_005259.1 + 66214 0.68 0.85154
Target:  5'- gCGCgGUCGCGCCGACGc--ACACg- -3'
miRNA:   3'- aGUGgCAGCGUGGUUGUucuUGUGga -5'
23498 5' -51.7 NC_005259.1 + 65543 0.66 0.905299
Target:  5'- -gACCGagGUACuCGACAAGAucggcccauagACACCg -3'
miRNA:   3'- agUGGCagCGUG-GUUGUUCU-----------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 65380 0.68 0.842863
Target:  5'- cCACCGguaaGgGCaacgcaGACAAGGACACCg -3'
miRNA:   3'- aGUGGCag--CgUGg-----UUGUUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 65121 0.71 0.691453
Target:  5'- gUCACCGUcggCGCACCGGCGGc--CACCc -3'
miRNA:   3'- -AGUGGCA---GCGUGGUUGUUcuuGUGGa -5'
23498 5' -51.7 NC_005259.1 + 64682 0.72 0.602775
Target:  5'- gCACCGcCGCGCCGcCGAGcGAUACCc -3'
miRNA:   3'- aGUGGCaGCGUGGUuGUUC-UUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 63850 0.69 0.796277
Target:  5'- -aAgCG-CGUACCGGCGAGGugGCCg -3'
miRNA:   3'- agUgGCaGCGUGGUUGUUCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 63682 0.71 0.658334
Target:  5'- gCACCGgCGCGCCGGgGAucuGCGCCUg -3'
miRNA:   3'- aGUGGCaGCGUGGUUgUUcu-UGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 63636 0.66 0.924287
Target:  5'- aUCAUCGUgGCgagcugcucGCUGGCcGGGACGCCg -3'
miRNA:   3'- -AGUGGCAgCG---------UGGUUGuUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 63562 0.69 0.796277
Target:  5'- cCACCGaCGCgACgAGCGGGAuauACGCCg -3'
miRNA:   3'- aGUGGCaGCG-UGgUUGUUCU---UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 61270 0.67 0.876132
Target:  5'- -gACCGUCGCuggucucgauGCCGACGAacgcGAGCGgCUg -3'
miRNA:   3'- agUGGCAGCG----------UGGUUGUU----CUUGUgGA- -5'
23498 5' -51.7 NC_005259.1 + 61193 0.7 0.744275
Target:  5'- cUCGCCGgucugcUUGCACCAcaucGCAGGAagcggcggugugcGCACCg -3'
miRNA:   3'- -AGUGGC------AGCGUGGU----UGUUCU-------------UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 61135 0.7 0.724047
Target:  5'- -uGCCGUucucgaucCGUGCCGACucAAGGACACCg -3'
miRNA:   3'- agUGGCA--------GCGUGGUUG--UUCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 59602 0.77 0.37795
Target:  5'- cUCACgGUCcCGCCGACAGGAcagGCACCc -3'
miRNA:   3'- -AGUGgCAGcGUGGUUGUUCU---UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 56677 0.7 0.71326
Target:  5'- -gGCuCGUUGCGCCAcccauacggcuGCGAGGugGCCa -3'
miRNA:   3'- agUG-GCAGCGUGGU-----------UGUUCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 56574 0.7 0.73474
Target:  5'- -gAUCGUCGCGgCuGCGAuGAGCGCCUc -3'
miRNA:   3'- agUGGCAGCGUgGuUGUU-CUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 55582 0.67 0.868183
Target:  5'- aUCACCGcCGCGCUGGCcacgcGAUACCa -3'
miRNA:   3'- -AGUGGCaGCGUGGUUGuuc--UUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 52792 0.67 0.876132
Target:  5'- -uGCCGUCGacagcaCACCGACGAGAu--CCg -3'
miRNA:   3'- agUGGCAGC------GUGGUUGUUCUuguGGa -5'
23498 5' -51.7 NC_005259.1 + 52594 0.67 0.868183
Target:  5'- gUCGCCGa-GCACCAGCGccguacGGugGCCa -3'
miRNA:   3'- -AGUGGCagCGUGGUUGUu-----CUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 52135 0.73 0.590596
Target:  5'- cCGCCGUCcgGCACCucgccgaGGCAGGcAGCGCCg -3'
miRNA:   3'- aGUGGCAG--CGUGG-------UUGUUC-UUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 51760 0.67 0.876132
Target:  5'- gCAgCGUUGCGCuCGGC--GAGCGCCUu -3'
miRNA:   3'- aGUgGCAGCGUG-GUUGuuCUUGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.