miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23498 5' -51.7 NC_005259.1 + 51133 0.69 0.805987
Target:  5'- aUCACCGUCGgGgCGGCcauGAGCGCg- -3'
miRNA:   3'- -AGUGGCAGCgUgGUUGuu-CUUGUGga -5'
23498 5' -51.7 NC_005259.1 + 47489 0.74 0.494579
Target:  5'- gUCACCGagGCG-CGGCAGGAACACgCUg -3'
miRNA:   3'- -AGUGGCagCGUgGUUGUUCUUGUG-GA- -5'
23498 5' -51.7 NC_005259.1 + 47292 0.67 0.876132
Target:  5'- cCGCCGUCGC-CgGACAGcGACcCCUu -3'
miRNA:   3'- aGUGGCAGCGuGgUUGUUcUUGuGGA- -5'
23498 5' -51.7 NC_005259.1 + 46885 0.67 0.898412
Target:  5'- gCGCCGcCGC-CCG-CGAuGAGCGCCc -3'
miRNA:   3'- aGUGGCaGCGuGGUuGUU-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 46759 0.67 0.868183
Target:  5'- gCGCCGacaccUGCGCCGACAGccGCGCCc -3'
miRNA:   3'- aGUGGCa----GCGUGGUUGUUcuUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 45725 0.71 0.658334
Target:  5'- aUCGCCuG-CGCACCAcCGAGGccgcGCACCg -3'
miRNA:   3'- -AGUGG-CaGCGUGGUuGUUCU----UGUGGa -5'
23498 5' -51.7 NC_005259.1 + 45633 0.67 0.891252
Target:  5'- -gGCCGggcagCGCGCCGgugccGCcguGAACACCg -3'
miRNA:   3'- agUGGCa----GCGUGGU-----UGuu-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 45534 0.66 0.905299
Target:  5'- cCGCCGUgGCugCgAGCGGGuugcuCGCCg -3'
miRNA:   3'- aGUGGCAgCGugG-UUGUUCuu---GUGGa -5'
23498 5' -51.7 NC_005259.1 + 44650 0.72 0.62499
Target:  5'- -uGCCGcCGC-CCGACucGAACGCCa -3'
miRNA:   3'- agUGGCaGCGuGGUUGuuCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 44007 0.66 0.922502
Target:  5'- aCACUGUCcuugagcguuucgaGCGCgGACu-GAACACCg -3'
miRNA:   3'- aGUGGCAG--------------CGUGgUUGuuCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 43782 0.68 0.859983
Target:  5'- cUCGCCGg-GCAUgAGCAGcgcGGGCACCg -3'
miRNA:   3'- -AGUGGCagCGUGgUUGUU---CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 42985 0.67 0.868183
Target:  5'- aUCAUCGUUGcCGCCccgccgaacaggGACGAGAACaaACCg -3'
miRNA:   3'- -AGUGGCAGC-GUGG------------UUGUUCUUG--UGGa -5'
23498 5' -51.7 NC_005259.1 + 42193 0.66 0.930054
Target:  5'- cCGCUG-CGCGCCGucGCGAuGGAUGCCc -3'
miRNA:   3'- aGUGGCaGCGUGGU--UGUU-CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 41713 0.69 0.776343
Target:  5'- -aGCCGcCGCauACCGGCGgcggggAGGACACCg -3'
miRNA:   3'- agUGGCaGCG--UGGUUGU------UCUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 39320 0.7 0.755799
Target:  5'- cCGCUGUCGCGCC-GCu-GGugACCg -3'
miRNA:   3'- aGUGGCAGCGUGGuUGuuCUugUGGa -5'
23498 5' -51.7 NC_005259.1 + 37160 0.71 0.680457
Target:  5'- gUCACCGcCGCGCCcGCc--GACGCCg -3'
miRNA:   3'- -AGUGGCaGCGUGGuUGuucUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 36948 0.72 0.602775
Target:  5'- gUCACCGggGUGCCcGCGAGAcCGCCUc -3'
miRNA:   3'- -AGUGGCagCGUGGuUGUUCUuGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 36877 0.76 0.433025
Target:  5'- gCACCGccCGCGCCGACGAcgccgguGAGCGCCc -3'
miRNA:   3'- aGUGGCa-GCGUGGUUGUU-------CUUGUGGa -5'
23498 5' -51.7 NC_005259.1 + 36231 0.66 0.918238
Target:  5'- gCACC-UUG-GCCAGCGcGAGCGCCUg -3'
miRNA:   3'- aGUGGcAGCgUGGUUGUuCUUGUGGA- -5'
23498 5' -51.7 NC_005259.1 + 31889 0.67 0.898412
Target:  5'- cUCGCCGgucucaagGC-CCGGCGcGAGCGCCUc -3'
miRNA:   3'- -AGUGGCag------CGuGGUUGUuCUUGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.