Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23499 | 5' | -58.7 | NC_005259.1 | + | 51457 | 0.66 | 0.63851 |
Target: 5'- cGCCGAuagagcuugUugCCCUCGgcGACCcACACCGc -3' miRNA: 3'- -UGGCU---------GugGGGAGU--CUGGcUGUGGCu -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 19650 | 0.71 | 0.32728 |
Target: 5'- cACCGGCACCgCCUCGGGCa---GCCGc -3' miRNA: 3'- -UGGCUGUGG-GGAGUCUGgcugUGGCu -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 26095 | 0.71 | 0.32728 |
Target: 5'- cGCCGAgAagacCCCCgagCAGACCGcCGCCGc -3' miRNA: 3'- -UGGCUgU----GGGGa--GUCUGGCuGUGGCu -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 52141 | 0.71 | 0.350723 |
Target: 5'- uCCGGCACCUCgccgaggCAGGCa-GCGCCGAg -3' miRNA: 3'- uGGCUGUGGGGa------GUCUGgcUGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 63427 | 0.71 | 0.350723 |
Target: 5'- uGCCGAgcaGCCgCUCGGGCgaGACAUCGAg -3' miRNA: 3'- -UGGCUg--UGGgGAGUCUGg-CUGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 44730 | 0.71 | 0.350723 |
Target: 5'- cCCGGCagcGCgCCCUC-GACCG-CGCCGAg -3' miRNA: 3'- uGGCUG---UG-GGGAGuCUGGCuGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 3053 | 0.71 | 0.358798 |
Target: 5'- cGCCGACuACUaCCgucgaCGGGCCGAgGCCGAc -3' miRNA: 3'- -UGGCUG-UGG-GGa----GUCUGGCUgUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 4398 | 0.71 | 0.358798 |
Target: 5'- aACCGACACCgaaCUacgaGGGCCGcCACCGc -3' miRNA: 3'- -UGGCUGUGGg--GAg---UCUGGCuGUGGCu -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 9699 | 0.7 | 0.366176 |
Target: 5'- cGCCGcucacuggGCACCguCCUCGGGCCGGucgagcuCGCCGAu -3' miRNA: 3'- -UGGC--------UGUGG--GGAGUCUGGCU-------GUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 29679 | 0.71 | 0.319728 |
Target: 5'- uGCCgGACGCgCCgcaaUCgAGACCGAUGCCGAg -3' miRNA: 3'- -UGG-CUGUGgGG----AG-UCUGGCUGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 15145 | 0.72 | 0.312307 |
Target: 5'- -aCGGgGCCaCCUCGGugGCCGAgGCCGAg -3' miRNA: 3'- ugGCUgUGG-GGAGUC--UGGCUgUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 8050 | 0.72 | 0.305018 |
Target: 5'- uCCGACACCgC-CGGucgccGCCGACAUCGAg -3' miRNA: 3'- uGGCUGUGGgGaGUC-----UGGCUGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 18574 | 0.78 | 0.115644 |
Target: 5'- cGCCGcCgACCCCgagCAGACCGACcCCGAu -3' miRNA: 3'- -UGGCuG-UGGGGa--GUCUGGCUGuGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 2026 | 0.77 | 0.135731 |
Target: 5'- cACCGGCACCUCagugCGGugggcggucACCGGCACCGAg -3' miRNA: 3'- -UGGCUGUGGGGa---GUC---------UGGCUGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 46779 | 0.76 | 0.1675 |
Target: 5'- aGCCG-CGCCCgC-CGGGCCGAaCACCGAg -3' miRNA: 3'- -UGGCuGUGGG-GaGUCUGGCU-GUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 44846 | 0.75 | 0.181043 |
Target: 5'- cACCG-CGCCCgagcagucgCUCAGACCGGCGgCGAg -3' miRNA: 3'- -UGGCuGUGGG---------GAGUCUGGCUGUgGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 28363 | 0.74 | 0.211058 |
Target: 5'- uGCUGGCugCCCcaccUCGGGCCGAaACCGGa -3' miRNA: 3'- -UGGCUGugGGG----AGUCUGGCUgUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 25963 | 0.74 | 0.211058 |
Target: 5'- cGCCGACGCCUgcgaUgAGACCGggcaGCGCCGAg -3' miRNA: 3'- -UGGCUGUGGGg---AgUCUGGC----UGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 7836 | 0.72 | 0.297152 |
Target: 5'- gGCgGuCACCCCUuacgggaCGGACCG-CGCCGAc -3' miRNA: 3'- -UGgCuGUGGGGA-------GUCUGGCuGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 18303 | 0.72 | 0.29786 |
Target: 5'- cGCCGuuCugCCCgguGugCGACACCGAg -3' miRNA: 3'- -UGGCu-GugGGGaguCugGCUGUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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