miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23499 5' -58.7 NC_005259.1 + 2026 0.77 0.135731
Target:  5'- cACCGGCACCUCagugCGGugggcggucACCGGCACCGAg -3'
miRNA:   3'- -UGGCUGUGGGGa---GUC---------UGGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 3053 0.71 0.358798
Target:  5'- cGCCGACuACUaCCgucgaCGGGCCGAgGCCGAc -3'
miRNA:   3'- -UGGCUG-UGG-GGa----GUCUGGCUgUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 3566 0.66 0.596531
Target:  5'- uGCCGAgcuCGCCgCCUacaaGGACauCGACACCGc -3'
miRNA:   3'- -UGGCU---GUGG-GGAg---UCUG--GCUGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 4398 0.71 0.358798
Target:  5'- aACCGACACCgaaCUacgaGGGCCGcCACCGc -3'
miRNA:   3'- -UGGCUGUGGg--GAg---UCUGGCuGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 4526 0.66 0.634307
Target:  5'- uGCgCGGCACCCCggucgauugugccCAGugCGggcacgaggucACGCCGAu -3'
miRNA:   3'- -UG-GCUGUGGGGa------------GUCugGC-----------UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 6079 0.66 0.63851
Target:  5'- cGCCGAacaggACgCCCUCAacGCCGAgauCGCCGAg -3'
miRNA:   3'- -UGGCUg----UG-GGGAGUc-UGGCU---GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 6227 0.66 0.628002
Target:  5'- cGCCGACACCgU---GACCGugGgCGAg -3'
miRNA:   3'- -UGGCUGUGGgGaguCUGGCugUgGCU- -5'
23499 5' -58.7 NC_005259.1 + 6928 0.7 0.409918
Target:  5'- aACCGcCGCCgCCUUgAGGCCGAgcucgcCGCCGAc -3'
miRNA:   3'- -UGGCuGUGG-GGAG-UCUGGCU------GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 7836 0.72 0.297152
Target:  5'- gGCgGuCACCCCUuacgggaCGGACCG-CGCCGAc -3'
miRNA:   3'- -UGgCuGUGGGGA-------GUCUGGCuGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 8050 0.72 0.305018
Target:  5'- uCCGACACCgC-CGGucgccGCCGACAUCGAg -3'
miRNA:   3'- uGGCUGUGGgGaGUC-----UGGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 8238 0.67 0.544725
Target:  5'- uGCCGACACCCugccuuaccgguCUUGGGCgCGACguagguguuguACCGGg -3'
miRNA:   3'- -UGGCUGUGGG------------GAGUCUG-GCUG-----------UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 9699 0.7 0.366176
Target:  5'- cGCCGcucacuggGCACCguCCUCGGGCCGGucgagcuCGCCGAu -3'
miRNA:   3'- -UGGC--------UGUGG--GGAGUCUGGCU-------GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 12052 0.66 0.63851
Target:  5'- cACCGAgGCCgagCUCugcGGCaGACACCGAg -3'
miRNA:   3'- -UGGCUgUGGg--GAGu--CUGgCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 14190 0.67 0.534524
Target:  5'- aACCGcuCACCCCcgagCAGGCCGGgAUCa- -3'
miRNA:   3'- -UGGCu-GUGGGGa---GUCUGGCUgUGGcu -5'
23499 5' -58.7 NC_005259.1 + 14329 0.69 0.446416
Target:  5'- cGCCGcCGCCCgCgugCGGgccGCCGACGCCa- -3'
miRNA:   3'- -UGGCuGUGGG-Ga--GUC---UGGCUGUGGcu -5'
23499 5' -58.7 NC_005259.1 + 14785 0.69 0.443616
Target:  5'- uUCGACAUCCCUCcgcuguuccacgccGGGCUGAUgACCGGu -3'
miRNA:   3'- uGGCUGUGGGGAG--------------UCUGGCUG-UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 15145 0.72 0.312307
Target:  5'- -aCGGgGCCaCCUCGGugGCCGAgGCCGAg -3'
miRNA:   3'- ugGCUgUGG-GGAGUC--UGGCUgUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 16231 0.66 0.596531
Target:  5'- gGCCGaACGCaCCC-CGGugCugcGCACCGAc -3'
miRNA:   3'- -UGGC-UGUG-GGGaGUCugGc--UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 17734 0.66 0.595485
Target:  5'- cACCGugGCUgCUCgacgcgauccgugAGGCCGccgcGCGCCGGg -3'
miRNA:   3'- -UGGCugUGGgGAG-------------UCUGGC----UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 18136 0.66 0.596531
Target:  5'- cAUCGGCAaggCCauggacgagaUCGGGCUGACGCCGGa -3'
miRNA:   3'- -UGGCUGUg--GGg---------AGUCUGGCUGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.