miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23499 5' -58.7 NC_005259.1 + 67713 0.66 0.596531
Target:  5'- gGCgGGCauACCCgUCAGccucgauCCGAUACCGGc -3'
miRNA:   3'- -UGgCUG--UGGGgAGUCu------GGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 63659 0.66 0.586085
Target:  5'- gGCCggGACGCCggacaCCUCGGgcACCGGCgcGCCGGg -3'
miRNA:   3'- -UGG--CUGUGG-----GGAGUC--UGGCUG--UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 63427 0.71 0.350723
Target:  5'- uGCCGAgcaGCCgCUCGGGCgaGACAUCGAg -3'
miRNA:   3'- -UGGCUg--UGGgGAGUCUGg-CUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 62128 0.67 0.575675
Target:  5'- cACCGAggugaucgucuCgACCaCCUCAGGCCGcaGCACCu- -3'
miRNA:   3'- -UGGCU-----------G-UGG-GGAGUCUGGC--UGUGGcu -5'
23499 5' -58.7 NC_005259.1 + 60451 0.7 0.392378
Target:  5'- cCCGACACCUCgauu-CCGACGCUGGu -3'
miRNA:   3'- uGGCUGUGGGGagucuGGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 57458 0.69 0.455821
Target:  5'- -gCGACGCUgCggCAGGCCGgugGCACCGGa -3'
miRNA:   3'- ugGCUGUGGgGa-GUCUGGC---UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 56289 0.68 0.465332
Target:  5'- uAUCGGCACCag-CAGACCacGugGCCGGa -3'
miRNA:   3'- -UGGCUGUGGggaGUCUGG--CugUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 52141 0.71 0.350723
Target:  5'- uCCGGCACCUCgccgaggCAGGCa-GCGCCGAg -3'
miRNA:   3'- uGGCUGUGGGGa------GUCUGgcUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 51992 0.67 0.575675
Target:  5'- cACCGACGCCgaUCUC-GACCgGAUGCaCGAg -3'
miRNA:   3'- -UGGCUGUGG--GGAGuCUGG-CUGUG-GCU- -5'
23499 5' -58.7 NC_005259.1 + 51457 0.66 0.63851
Target:  5'- cGCCGAuagagcuugUugCCCUCGgcGACCcACACCGc -3'
miRNA:   3'- -UGGCU---------GugGGGAGU--CUGGcUGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 48399 0.68 0.493476
Target:  5'- cGCCGACGCCCgCcgucgagUCAccgcGACCGccacCACCGAg -3'
miRNA:   3'- -UGGCUGUGGG-G-------AGU----CUGGCu---GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 47928 0.66 0.63851
Target:  5'- cGCCGAgGCCCUggaAG-CCGAUgacggcgguGCCGAu -3'
miRNA:   3'- -UGGCUgUGGGGag-UCuGGCUG---------UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 46779 0.76 0.1675
Target:  5'- aGCCG-CGCCCgC-CGGGCCGAaCACCGAg -3'
miRNA:   3'- -UGGCuGUGGG-GaGUCUGGCU-GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 45926 0.68 0.498408
Target:  5'- gACCGAgGCucugcccgugcagauCCCUCAGcacguuGCCGACguuGCCGAg -3'
miRNA:   3'- -UGGCUgUG---------------GGGAGUC------UGGCUG---UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 45619 0.66 0.596531
Target:  5'- cUCGAUGCCCgC-CGGGCCGggcagcGCGCCGGu -3'
miRNA:   3'- uGGCUGUGGG-GaGUCUGGC------UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 44846 0.75 0.181043
Target:  5'- cACCG-CGCCCgagcagucgCUCAGACCGGCGgCGAg -3'
miRNA:   3'- -UGGCuGUGGG---------GAGUCUGGCUGUgGCU- -5'
23499 5' -58.7 NC_005259.1 + 44730 0.71 0.350723
Target:  5'- cCCGGCagcGCgCCCUC-GACCG-CGCCGAg -3'
miRNA:   3'- uGGCUG---UG-GGGAGuCUGGCuGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 44535 0.68 0.474945
Target:  5'- cCCGGCAgUCCaCUCAuGCCGAgACCGGc -3'
miRNA:   3'- uGGCUGU-GGG-GAGUcUGGCUgUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 43022 0.66 0.617497
Target:  5'- aACCGGCgauGCCgCCgagCAGGCCGccgaGCAgCGAa -3'
miRNA:   3'- -UGGCUG---UGG-GGa--GUCUGGC----UGUgGCU- -5'
23499 5' -58.7 NC_005259.1 + 41436 0.66 0.62485
Target:  5'- gGCCGccauuuGCGCCCCgcguagUAGACCcagaagcggcccguGACGCCGu -3'
miRNA:   3'- -UGGC------UGUGGGGa-----GUCUGG--------------CUGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.