miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23499 5' -58.7 NC_005259.1 + 18303 0.72 0.29786
Target:  5'- cGCCGuuCugCCCgguGugCGACACCGAg -3'
miRNA:   3'- -UGGCu-GugGGGaguCugGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 18574 0.78 0.115644
Target:  5'- cGCCGcCgACCCCgagCAGACCGACcCCGAu -3'
miRNA:   3'- -UGGCuG-UGGGGa--GUCUGGCUGuGGCU- -5'
23499 5' -58.7 NC_005259.1 + 19650 0.71 0.32728
Target:  5'- cACCGGCACCgCCUCGGGCa---GCCGc -3'
miRNA:   3'- -UGGCUGUGG-GGAGUCUGgcugUGGCu -5'
23499 5' -58.7 NC_005259.1 + 22669 0.66 0.63851
Target:  5'- cGCCGACGCa-CU--GACCGcCGCCGAu -3'
miRNA:   3'- -UGGCUGUGggGAguCUGGCuGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 23754 0.81 0.070856
Target:  5'- cCCGACGCCCCgCAGACCGGCcCCa- -3'
miRNA:   3'- uGGCUGUGGGGaGUCUGGCUGuGGcu -5'
23499 5' -58.7 NC_005259.1 + 24808 0.67 0.554988
Target:  5'- gACCGAggUGCCCCggCAcGCCGugcccGCACCGAc -3'
miRNA:   3'- -UGGCU--GUGGGGa-GUcUGGC-----UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 24862 0.67 0.565307
Target:  5'- cGCCGAgGCCCgccucgCUCuGACCGcUAUCGAg -3'
miRNA:   3'- -UGGCUgUGGG------GAGuCUGGCuGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 25963 0.74 0.211058
Target:  5'- cGCCGACGCCUgcgaUgAGACCGggcaGCGCCGAg -3'
miRNA:   3'- -UGGCUGUGGGg---AgUCUGGC----UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 26095 0.71 0.32728
Target:  5'- cGCCGAgAagacCCCCgagCAGACCGcCGCCGc -3'
miRNA:   3'- -UGGCUgU----GGGGa--GUCUGGCuGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 26138 0.68 0.49446
Target:  5'- uCCGACGCCgCCg-AGGCCGAgCAgcCCGAa -3'
miRNA:   3'- uGGCUGUGG-GGagUCUGGCU-GU--GGCU- -5'
23499 5' -58.7 NC_005259.1 + 26344 0.66 0.628002
Target:  5'- ---aGCACgCCCUCGGGCCGAgCugCGc -3'
miRNA:   3'- uggcUGUG-GGGAGUCUGGCU-GugGCu -5'
23499 5' -58.7 NC_005259.1 + 28363 0.74 0.211058
Target:  5'- uGCUGGCugCCCcaccUCGGGCCGAaACCGGa -3'
miRNA:   3'- -UGGCUGugGGG----AGUCUGGCUgUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 29361 0.67 0.543702
Target:  5'- cGCCGucgagGCACCCgUCGaggucuacccgccGACCuACACCGAg -3'
miRNA:   3'- -UGGC-----UGUGGGgAGU-------------CUGGcUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 29679 0.71 0.319728
Target:  5'- uGCCgGACGCgCCgcaaUCgAGACCGAUGCCGAg -3'
miRNA:   3'- -UGG-CUGUGgGG----AG-UCUGGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 30720 0.67 0.554988
Target:  5'- cGCCGACGCgCCgCAcGAgCGAUACCuGAg -3'
miRNA:   3'- -UGGCUGUGgGGaGU-CUgGCUGUGG-CU- -5'
23499 5' -58.7 NC_005259.1 + 31686 0.67 0.534524
Target:  5'- cCCGAgGCaUCCUCGGcggugaccacACCGAUGCCGGu -3'
miRNA:   3'- uGGCUgUG-GGGAGUC----------UGGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 32612 0.67 0.564272
Target:  5'- cGCCGACACCCucgacaucgagcuCUCGGuacGCCGcAUugGCCGGg -3'
miRNA:   3'- -UGGCUGUGGG-------------GAGUC---UGGC-UG--UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 34427 0.66 0.63851
Target:  5'- cGCgaGACGCCCCUCGaugagcugccGACCGGgcagcguguCGCUGAu -3'
miRNA:   3'- -UGg-CUGUGGGGAGU----------CUGGCU---------GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 34539 0.68 0.474945
Target:  5'- cACCGAgGCagCCUCAGcuugccgucgggGCCGACGgCGAg -3'
miRNA:   3'- -UGGCUgUGg-GGAGUC------------UGGCUGUgGCU- -5'
23499 5' -58.7 NC_005259.1 + 35287 0.66 0.617497
Target:  5'- cGCCGAUguGCCCCUUgaaguagauGACCGAgGgCGGu -3'
miRNA:   3'- -UGGCUG--UGGGGAGu--------CUGGCUgUgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.