miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23499 5' -58.7 NC_005259.1 + 60451 0.7 0.392378
Target:  5'- cCCGACACCUCgauu-CCGACGCUGGu -3'
miRNA:   3'- uGGCUGUGGGGagucuGGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 6928 0.7 0.409918
Target:  5'- aACCGcCGCCgCCUUgAGGCCGAgcucgcCGCCGAc -3'
miRNA:   3'- -UGGCuGUGG-GGAG-UCUGGCU------GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 37930 0.7 0.409918
Target:  5'- cACCGcuCACCCCUC-GACCacguaGAUACCGu -3'
miRNA:   3'- -UGGCu-GUGGGGAGuCUGG-----CUGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 14785 0.69 0.443616
Target:  5'- uUCGACAUCCCUCcgcuguuccacgccGGGCUGAUgACCGGu -3'
miRNA:   3'- uGGCUGUGGGGAG--------------UCUGGCUG-UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 14329 0.69 0.446416
Target:  5'- cGCCGcCGCCCgCgugCGGgccGCCGACGCCa- -3'
miRNA:   3'- -UGGCuGUGGG-Ga--GUC---UGGCUGUGGcu -5'
23499 5' -58.7 NC_005259.1 + 57458 0.69 0.455821
Target:  5'- -gCGACGCUgCggCAGGCCGgugGCACCGGa -3'
miRNA:   3'- ugGCUGUGGgGa-GUCUGGC---UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 56289 0.68 0.465332
Target:  5'- uAUCGGCACCag-CAGACCacGugGCCGGa -3'
miRNA:   3'- -UGGCUGUGGggaGUCUGG--CugUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 34539 0.68 0.474945
Target:  5'- cACCGAgGCagCCUCAGcuugccgucgggGCCGACGgCGAg -3'
miRNA:   3'- -UGGCUgUGg-GGAGUC------------UGGCUGUgGCU- -5'
23499 5' -58.7 NC_005259.1 + 44535 0.68 0.474945
Target:  5'- cCCGGCAgUCCaCUCAuGCCGAgACCGGc -3'
miRNA:   3'- uGGCUGU-GGG-GAGUcUGGCUgUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 48399 0.68 0.493476
Target:  5'- cGCCGACGCCCgCcgucgagUCAccgcGACCGccacCACCGAg -3'
miRNA:   3'- -UGGCUGUGGG-G-------AGU----CUGGCu---GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 26138 0.68 0.49446
Target:  5'- uCCGACGCCgCCg-AGGCCGAgCAgcCCGAa -3'
miRNA:   3'- uGGCUGUGG-GGagUCUGGCU-GU--GGCU- -5'
23499 5' -58.7 NC_005259.1 + 45926 0.68 0.498408
Target:  5'- gACCGAgGCucugcccgugcagauCCCUCAGcacguuGCCGACguuGCCGAg -3'
miRNA:   3'- -UGGCUgUG---------------GGGAGUC------UGGCUG---UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 37156 0.68 0.504354
Target:  5'- aGCCGuCACCgCCgcgCccGCCGACGCCGc -3'
miRNA:   3'- -UGGCuGUGG-GGa--GucUGGCUGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 14190 0.67 0.534524
Target:  5'- aACCGcuCACCCCcgagCAGGCCGGgAUCa- -3'
miRNA:   3'- -UGGCu-GUGGGGa---GUCUGGCUgUGGcu -5'
23499 5' -58.7 NC_005259.1 + 31686 0.67 0.534524
Target:  5'- cCCGAgGCaUCCUCGGcggugaccacACCGAUGCCGGu -3'
miRNA:   3'- uGGCUgUG-GGGAGUC----------UGGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 29361 0.67 0.543702
Target:  5'- cGCCGucgagGCACCCgUCGaggucuacccgccGACCuACACCGAg -3'
miRNA:   3'- -UGGC-----UGUGGGgAGU-------------CUGGcUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 8238 0.67 0.544725
Target:  5'- uGCCGACACCCugccuuaccgguCUUGGGCgCGACguagguguuguACCGGg -3'
miRNA:   3'- -UGGCUGUGGG------------GAGUCUG-GCUG-----------UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 36872 0.67 0.544725
Target:  5'- uGCUGGCACCgCC-CGcGCCGACgacGCCGGu -3'
miRNA:   3'- -UGGCUGUGG-GGaGUcUGGCUG---UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 24808 0.67 0.554988
Target:  5'- gACCGAggUGCCCCggCAcGCCGugcccGCACCGAc -3'
miRNA:   3'- -UGGCU--GUGGGGa-GUcUGGC-----UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 30720 0.67 0.554988
Target:  5'- cGCCGACGCgCCgCAcGAgCGAUACCuGAg -3'
miRNA:   3'- -UGGCUGUGgGGaGU-CUgGCUGUGG-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.