Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23499 | 5' | -58.7 | NC_005259.1 | + | 17734 | 0.66 | 0.595485 |
Target: 5'- cACCGugGCUgCUCgacgcgauccgugAGGCCGccgcGCGCCGGg -3' miRNA: 3'- -UGGCugUGGgGAG-------------UCUGGC----UGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 63659 | 0.66 | 0.586085 |
Target: 5'- gGCCggGACGCCggacaCCUCGGgcACCGGCgcGCCGGg -3' miRNA: 3'- -UGG--CUGUGG-----GGAGUC--UGGCUG--UGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 51992 | 0.67 | 0.575675 |
Target: 5'- cACCGACGCCgaUCUC-GACCgGAUGCaCGAg -3' miRNA: 3'- -UGGCUGUGG--GGAGuCUGG-CUGUG-GCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 62128 | 0.67 | 0.575675 |
Target: 5'- cACCGAggugaucgucuCgACCaCCUCAGGCCGcaGCACCu- -3' miRNA: 3'- -UGGCU-----------G-UGG-GGAGUCUGGC--UGUGGcu -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 24862 | 0.67 | 0.565307 |
Target: 5'- cGCCGAgGCCCgccucgCUCuGACCGcUAUCGAg -3' miRNA: 3'- -UGGCUgUGGG------GAGuCUGGCuGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 32612 | 0.67 | 0.564272 |
Target: 5'- cGCCGACACCCucgacaucgagcuCUCGGuacGCCGcAUugGCCGGg -3' miRNA: 3'- -UGGCUGUGGG-------------GAGUC---UGGC-UG--UGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 24808 | 0.67 | 0.554988 |
Target: 5'- gACCGAggUGCCCCggCAcGCCGugcccGCACCGAc -3' miRNA: 3'- -UGGCU--GUGGGGa-GUcUGGC-----UGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 30720 | 0.67 | 0.554988 |
Target: 5'- cGCCGACGCgCCgCAcGAgCGAUACCuGAg -3' miRNA: 3'- -UGGCUGUGgGGaGU-CUgGCUGUGG-CU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 36872 | 0.67 | 0.544725 |
Target: 5'- uGCUGGCACCgCC-CGcGCCGACgacGCCGGu -3' miRNA: 3'- -UGGCUGUGG-GGaGUcUGGCUG---UGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 8238 | 0.67 | 0.544725 |
Target: 5'- uGCCGACACCCugccuuaccgguCUUGGGCgCGACguagguguuguACCGGg -3' miRNA: 3'- -UGGCUGUGGG------------GAGUCUG-GCUG-----------UGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 29361 | 0.67 | 0.543702 |
Target: 5'- cGCCGucgagGCACCCgUCGaggucuacccgccGACCuACACCGAg -3' miRNA: 3'- -UGGC-----UGUGGGgAGU-------------CUGGcUGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 14190 | 0.67 | 0.534524 |
Target: 5'- aACCGcuCACCCCcgagCAGGCCGGgAUCa- -3' miRNA: 3'- -UGGCu-GUGGGGa---GUCUGGCUgUGGcu -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 31686 | 0.67 | 0.534524 |
Target: 5'- cCCGAgGCaUCCUCGGcggugaccacACCGAUGCCGGu -3' miRNA: 3'- uGGCUgUG-GGGAGUC----------UGGCUGUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 37156 | 0.68 | 0.504354 |
Target: 5'- aGCCGuCACCgCCgcgCccGCCGACGCCGc -3' miRNA: 3'- -UGGCuGUGG-GGa--GucUGGCUGUGGCu -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 45926 | 0.68 | 0.498408 |
Target: 5'- gACCGAgGCucugcccgugcagauCCCUCAGcacguuGCCGACguuGCCGAg -3' miRNA: 3'- -UGGCUgUG---------------GGGAGUC------UGGCUG---UGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 26138 | 0.68 | 0.49446 |
Target: 5'- uCCGACGCCgCCg-AGGCCGAgCAgcCCGAa -3' miRNA: 3'- uGGCUGUGG-GGagUCUGGCU-GU--GGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 48399 | 0.68 | 0.493476 |
Target: 5'- cGCCGACGCCCgCcgucgagUCAccgcGACCGccacCACCGAg -3' miRNA: 3'- -UGGCUGUGGG-G-------AGU----CUGGCu---GUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 34539 | 0.68 | 0.474945 |
Target: 5'- cACCGAgGCagCCUCAGcuugccgucgggGCCGACGgCGAg -3' miRNA: 3'- -UGGCUgUGg-GGAGUC------------UGGCUGUgGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 44535 | 0.68 | 0.474945 |
Target: 5'- cCCGGCAgUCCaCUCAuGCCGAgACCGGc -3' miRNA: 3'- uGGCUGU-GGG-GAGUcUGGCUgUGGCU- -5' |
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23499 | 5' | -58.7 | NC_005259.1 | + | 56289 | 0.68 | 0.465332 |
Target: 5'- uAUCGGCACCag-CAGACCacGugGCCGGa -3' miRNA: 3'- -UGGCUGUGGggaGUCUGG--CugUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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