miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23499 5' -58.7 NC_005259.1 + 57458 0.69 0.455821
Target:  5'- -gCGACGCUgCggCAGGCCGgugGCACCGGa -3'
miRNA:   3'- ugGCUGUGGgGa-GUCUGGC---UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 14329 0.69 0.446416
Target:  5'- cGCCGcCGCCCgCgugCGGgccGCCGACGCCa- -3'
miRNA:   3'- -UGGCuGUGGG-Ga--GUC---UGGCUGUGGcu -5'
23499 5' -58.7 NC_005259.1 + 14785 0.69 0.443616
Target:  5'- uUCGACAUCCCUCcgcuguuccacgccGGGCUGAUgACCGGu -3'
miRNA:   3'- uGGCUGUGGGGAG--------------UCUGGCUG-UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 37930 0.7 0.409918
Target:  5'- cACCGcuCACCCCUC-GACCacguaGAUACCGu -3'
miRNA:   3'- -UGGCu-GUGGGGAGuCUGG-----CUGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 6928 0.7 0.409918
Target:  5'- aACCGcCGCCgCCUUgAGGCCGAgcucgcCGCCGAc -3'
miRNA:   3'- -UGGCuGUGG-GGAG-UCUGGCU------GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 60451 0.7 0.392378
Target:  5'- cCCGACACCUCgauu-CCGACGCUGGu -3'
miRNA:   3'- uGGCUGUGGGGagucuGGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 9699 0.7 0.366176
Target:  5'- cGCCGcucacuggGCACCguCCUCGGGCCGGucgagcuCGCCGAu -3'
miRNA:   3'- -UGGC--------UGUGG--GGAGUCUGGCU-------GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 3053 0.71 0.358798
Target:  5'- cGCCGACuACUaCCgucgaCGGGCCGAgGCCGAc -3'
miRNA:   3'- -UGGCUG-UGG-GGa----GUCUGGCUgUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 4398 0.71 0.358798
Target:  5'- aACCGACACCgaaCUacgaGGGCCGcCACCGc -3'
miRNA:   3'- -UGGCUGUGGg--GAg---UCUGGCuGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 44730 0.71 0.350723
Target:  5'- cCCGGCagcGCgCCCUC-GACCG-CGCCGAg -3'
miRNA:   3'- uGGCUG---UG-GGGAGuCUGGCuGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 63427 0.71 0.350723
Target:  5'- uGCCGAgcaGCCgCUCGGGCgaGACAUCGAg -3'
miRNA:   3'- -UGGCUg--UGGgGAGUCUGg-CUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 52141 0.71 0.350723
Target:  5'- uCCGGCACCUCgccgaggCAGGCa-GCGCCGAg -3'
miRNA:   3'- uGGCUGUGGGGa------GUCUGgcUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 19650 0.71 0.32728
Target:  5'- cACCGGCACCgCCUCGGGCa---GCCGc -3'
miRNA:   3'- -UGGCUGUGG-GGAGUCUGgcugUGGCu -5'
23499 5' -58.7 NC_005259.1 + 26095 0.71 0.32728
Target:  5'- cGCCGAgAagacCCCCgagCAGACCGcCGCCGc -3'
miRNA:   3'- -UGGCUgU----GGGGa--GUCUGGCuGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 29679 0.71 0.319728
Target:  5'- uGCCgGACGCgCCgcaaUCgAGACCGAUGCCGAg -3'
miRNA:   3'- -UGG-CUGUGgGG----AG-UCUGGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 15145 0.72 0.312307
Target:  5'- -aCGGgGCCaCCUCGGugGCCGAgGCCGAg -3'
miRNA:   3'- ugGCUgUGG-GGAGUC--UGGCUgUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 8050 0.72 0.305018
Target:  5'- uCCGACACCgC-CGGucgccGCCGACAUCGAg -3'
miRNA:   3'- uGGCUGUGGgGaGUC-----UGGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 18303 0.72 0.29786
Target:  5'- cGCCGuuCugCCCgguGugCGACACCGAg -3'
miRNA:   3'- -UGGCu-GugGGGaguCugGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 7836 0.72 0.297152
Target:  5'- gGCgGuCACCCCUuacgggaCGGACCG-CGCCGAc -3'
miRNA:   3'- -UGgCuGUGGGGA-------GUCUGGCuGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 25963 0.74 0.211058
Target:  5'- cGCCGACGCCUgcgaUgAGACCGggcaGCGCCGAg -3'
miRNA:   3'- -UGGCUGUGGGg---AgUCUGGC----UGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.