miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
235 5' -65.9 AC_000008.1 + 12087 1.07 0.000066
Target:  5'- gUGCCGCGCACACCCAGCCCGCGGCCAu -3'
miRNA:   3'- -ACGGCGCGUGUGGGUCGGGCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 16238 0.72 0.054887
Target:  5'- -aCCGCGCACgucGCaCCGGCCgacggGCGGCCAu -3'
miRNA:   3'- acGGCGCGUG---UG-GGUCGGg----CGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 12905 0.72 0.056459
Target:  5'- gUGCUGCGUGCACgacgCGGCCUGUccGGCCAa -3'
miRNA:   3'- -ACGGCGCGUGUGg---GUCGGGCG--CCGGU- -5'
235 5' -65.9 AC_000008.1 + 23200 0.72 0.056459
Target:  5'- cUGCUGCGCGCGCUCAcgcuGCgCCaCGGCCu -3'
miRNA:   3'- -ACGGCGCGUGUGGGU----CG-GGcGCCGGu -5'
235 5' -65.9 AC_000008.1 + 8278 0.71 0.060927
Target:  5'- cGCCGCGCGaGCCCAaaguccagauguccGCgCGCGGCg- -3'
miRNA:   3'- aCGGCGCGUgUGGGU--------------CGgGCGCCGgu -5'
235 5' -65.9 AC_000008.1 + 23683 0.71 0.065001
Target:  5'- uUGCCaGCGCGCGCgggugccaccgCCAGCCCaggucCGGCCc -3'
miRNA:   3'- -ACGG-CGCGUGUG-----------GGUCGGGc----GCCGGu -5'
235 5' -65.9 AC_000008.1 + 18603 0.71 0.068757
Target:  5'- aGCCGCGCgu-CCCuGCgCCGCGccGCCAg -3'
miRNA:   3'- aCGGCGCGuguGGGuCG-GGCGC--CGGU- -5'
235 5' -65.9 AC_000008.1 + 19892 0.7 0.076903
Target:  5'- gGCCGCGUuugugcGCGCCCcagGGCgCGCGGUa- -3'
miRNA:   3'- aCGGCGCG------UGUGGG---UCGgGCGCCGgu -5'
235 5' -65.9 AC_000008.1 + 19626 0.7 0.07908
Target:  5'- gGCC-CGCAUGgCC-GCCCGuCGGCCGg -3'
miRNA:   3'- aCGGcGCGUGUgGGuCGGGC-GCCGGU- -5'
235 5' -65.9 AC_000008.1 + 15934 0.7 0.081315
Target:  5'- gGCCaagaaGCGCuccgaccaACACCCAGUgCGCGGCgCGg -3'
miRNA:   3'- aCGG-----CGCG--------UGUGGGUCGgGCGCCG-GU- -5'
235 5' -65.9 AC_000008.1 + 16977 0.7 0.081315
Target:  5'- gUGgCGCGgGCAaacugcaCCAGCCCGgGGCuCAg -3'
miRNA:   3'- -ACgGCGCgUGUg------GGUCGGGCgCCG-GU- -5'
235 5' -65.9 AC_000008.1 + 12545 0.7 0.083611
Target:  5'- gGCCGaaaacaggGC-CAUCCGGCCCGacgaGGCCGg -3'
miRNA:   3'- aCGGCg-------CGuGUGGGUCGGGCg---CCGGU- -5'
235 5' -65.9 AC_000008.1 + 17520 0.69 0.098736
Target:  5'- cGCCGuCGC-CGuCgCCAGCCCGUgcuGGCCc -3'
miRNA:   3'- aCGGC-GCGuGU-G-GGUCGGGCG---CCGGu -5'
235 5' -65.9 AC_000008.1 + 19762 0.69 0.098736
Target:  5'- cGCCGggcucCGCGCACCaCGGUCUGaauGGCCGc -3'
miRNA:   3'- aCGGC-----GCGUGUGG-GUCGGGCg--CCGGU- -5'
235 5' -65.9 AC_000008.1 + 18733 0.68 0.104329
Target:  5'- gGUC-UGCACGCCCAGUCC-CGGCg- -3'
miRNA:   3'- aCGGcGCGUGUGGGUCGGGcGCCGgu -5'
235 5' -65.9 AC_000008.1 + 18122 0.68 0.105193
Target:  5'- cGCCGCcggugguGCGCACgacgcaugccgcccgUCAGgCCGUGGCCGg -3'
miRNA:   3'- aCGGCG-------CGUGUG---------------GGUCgGGCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 16189 0.68 0.106942
Target:  5'- cGCCGCcgacccgGCACugCC-GCCCaacgcgcggcgGCGGCCc -3'
miRNA:   3'- aCGGCG-------CGUGugGGuCGGG-----------CGCCGGu -5'
235 5' -65.9 AC_000008.1 + 23945 0.68 0.107236
Target:  5'- cGUCGCGCGCACCgC-GUCCGCGcUCGg -3'
miRNA:   3'- aCGGCGCGUGUGG-GuCGGGCGCcGGU- -5'
235 5' -65.9 AC_000008.1 + 23848 0.68 0.110219
Target:  5'- aGCuCGCGguCGCUgAGCUCGCGccGCCGg -3'
miRNA:   3'- aCG-GCGCguGUGGgUCGGGCGC--CGGU- -5'
235 5' -65.9 AC_000008.1 + 17760 0.68 0.110219
Target:  5'- cGUCGUGCGCACCa--CCgGCGGCg- -3'
miRNA:   3'- aCGGCGCGUGUGGgucGGgCGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.