miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
235 5' -65.9 AC_000008.1 + 12414 0.66 0.165256
Target:  5'- cUGaCUGCGCGCAauccugacgcguUCCGGCagcagCCGCaGGCCAa -3'
miRNA:   3'- -AC-GGCGCGUGU------------GGGUCG-----GGCG-CCGGU- -5'
235 5' -65.9 AC_000008.1 + 16426 0.67 0.133368
Target:  5'- gUGcCCGUGCGCACCCGcccCCCGCGcaaCUAg -3'
miRNA:   3'- -AC-GGCGCGUGUGGGUc--GGGCGCc--GGU- -5'
235 5' -65.9 AC_000008.1 + 21595 0.67 0.144602
Target:  5'- gGuCCGUGUGCACCgGccGCaCCGCGGCg- -3'
miRNA:   3'- aC-GGCGCGUGUGGgU--CG-GGCGCCGgu -5'
235 5' -65.9 AC_000008.1 + 13907 0.66 0.148535
Target:  5'- gGcCCGCGCcCGCCCA-CCCGUcGUCAa -3'
miRNA:   3'- aC-GGCGCGuGUGGGUcGGGCGcCGGU- -5'
235 5' -65.9 AC_000008.1 + 12029 0.66 0.152565
Target:  5'- gGCgGCGCGaGCUCAGCgaCCGCGaGCUg -3'
miRNA:   3'- aCGgCGCGUgUGGGUCG--GGCGC-CGGu -5'
235 5' -65.9 AC_000008.1 + 23187 0.66 0.156276
Target:  5'- aGCgGUGCagccacaACGCgCAGCCCGUGGgCu -3'
miRNA:   3'- aCGgCGCG-------UGUGgGUCGGGCGCCgGu -5'
235 5' -65.9 AC_000008.1 + 5408 0.66 0.156694
Target:  5'- cUGCCG-GUcuuCGCCCuGCgCGuCGGCCAg -3'
miRNA:   3'- -ACGGCgCGu--GUGGGuCGgGC-GCCGGU- -5'
235 5' -65.9 AC_000008.1 + 16082 0.66 0.160923
Target:  5'- cGCCGC-CACcaguguCCaCAGUggaCGCGGCCAu -3'
miRNA:   3'- aCGGCGcGUGu-----GG-GUCGg--GCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 24582 0.66 0.160923
Target:  5'- cUGCCGUGCcaACCgCAGCCgaGCGGaCAa -3'
miRNA:   3'- -ACGGCGCGugUGG-GUCGGg-CGCCgGU- -5'
235 5' -65.9 AC_000008.1 + 17840 0.67 0.129806
Target:  5'- cGCCGCgGCgauugGCGCCguGCCCggaauugcauccGUGGCCu -3'
miRNA:   3'- aCGGCG-CG-----UGUGGguCGGG------------CGCCGGu -5'
235 5' -65.9 AC_000008.1 + 16335 0.68 0.11964
Target:  5'- gGCCGC-CGCAgC-AG-CCGCGGCCAu -3'
miRNA:   3'- aCGGCGcGUGUgGgUCgGGCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 21640 0.68 0.11328
Target:  5'- -cCUGCGCACGCCCuucucGGCCgGCaacGCCAc -3'
miRNA:   3'- acGGCGCGUGUGGG-----UCGGgCGc--CGGU- -5'
235 5' -65.9 AC_000008.1 + 8278 0.71 0.060927
Target:  5'- cGCCGCGCGaGCCCAaaguccagauguccGCgCGCGGCg- -3'
miRNA:   3'- aCGGCGCGUgUGGGU--------------CGgGCGCCGgu -5'
235 5' -65.9 AC_000008.1 + 18603 0.71 0.068757
Target:  5'- aGCCGCGCgu-CCCuGCgCCGCGccGCCAg -3'
miRNA:   3'- aCGGCGCGuguGGGuCG-GGCGC--CGGU- -5'
235 5' -65.9 AC_000008.1 + 15934 0.7 0.081315
Target:  5'- gGCCaagaaGCGCuccgaccaACACCCAGUgCGCGGCgCGg -3'
miRNA:   3'- aCGG-----CGCG--------UGUGGGUCGgGCGCCG-GU- -5'
235 5' -65.9 AC_000008.1 + 12545 0.7 0.083611
Target:  5'- gGCCGaaaacaggGC-CAUCCGGCCCGacgaGGCCGg -3'
miRNA:   3'- aCGGCg-------CGuGUGGGUCGGGCg---CCGGU- -5'
235 5' -65.9 AC_000008.1 + 17520 0.69 0.098736
Target:  5'- cGCCGuCGC-CGuCgCCAGCCCGUgcuGGCCc -3'
miRNA:   3'- aCGGC-GCGuGU-G-GGUCGGGCG---CCGGu -5'
235 5' -65.9 AC_000008.1 + 16189 0.68 0.106942
Target:  5'- cGCCGCcgacccgGCACugCC-GCCCaacgcgcggcgGCGGCCc -3'
miRNA:   3'- aCGGCG-------CGUGugGGuCGGG-----------CGCCGGu -5'
235 5' -65.9 AC_000008.1 + 23945 0.68 0.107236
Target:  5'- cGUCGCGCGCACCgC-GUCCGCGcUCGg -3'
miRNA:   3'- aCGGCGCGUGUGG-GuCGGGCGCcGGU- -5'
235 5' -65.9 AC_000008.1 + 17760 0.68 0.110219
Target:  5'- cGUCGUGCGCACCa--CCgGCGGCg- -3'
miRNA:   3'- aCGGCGCGUGUGGgucGGgCGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.