miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23500 3' -53.6 NC_005259.1 + 20532 0.66 0.876193
Target:  5'- gGGUG-CgCUGCCCGcaGCGUGGUGgAUCaGCa -3'
miRNA:   3'- -CUACuG-GGCGGGC--UGUACUAC-UAG-CG- -5'
23500 3' -53.6 NC_005259.1 + 44410 0.66 0.876193
Target:  5'- cGGUG-CCCGCCUGACcgGcag--CGCc -3'
miRNA:   3'- -CUACuGGGCGGGCUGuaCuacuaGCG- -5'
23500 3' -53.6 NC_005259.1 + 35690 0.66 0.876193
Target:  5'- --cGACgCCguGCCCGGCGaGG-GGUCGCu -3'
miRNA:   3'- cuaCUG-GG--CGGGCUGUaCUaCUAGCG- -5'
23500 3' -53.6 NC_005259.1 + 4991 0.66 0.876193
Target:  5'- cGAUGGCCgGgCacuaCGGCAaGGUGGUCGa -3'
miRNA:   3'- -CUACUGGgC-Gg---GCUGUaCUACUAGCg -5'
23500 3' -53.6 NC_005259.1 + 28224 0.66 0.876193
Target:  5'- --cGugCCGCCaccguCGGCGgcggGGUGGUCGa -3'
miRNA:   3'- cuaCugGGCGG-----GCUGUa---CUACUAGCg -5'
23500 3' -53.6 NC_005259.1 + 8795 0.66 0.868391
Target:  5'- --cGGCCCGCuuGGCGagGAUcuucUCGCg -3'
miRNA:   3'- cuaCUGGGCGggCUGUa-CUAcu--AGCG- -5'
23500 3' -53.6 NC_005259.1 + 36881 0.66 0.868391
Target:  5'- ---cGCCCGCgCCGACGacgccGGUGAgCGCc -3'
miRNA:   3'- cuacUGGGCG-GGCUGUa----CUACUaGCG- -5'
23500 3' -53.6 NC_005259.1 + 43778 0.66 0.860346
Target:  5'- --cGuACUCGCCgGGCAUGAgcagCGCg -3'
miRNA:   3'- cuaC-UGGGCGGgCUGUACUacuaGCG- -5'
23500 3' -53.6 NC_005259.1 + 65168 0.66 0.860346
Target:  5'- cAUGGCCCGCCgGGuCAaGGcgcUGGUCGa -3'
miRNA:   3'- cUACUGGGCGGgCU-GUaCU---ACUAGCg -5'
23500 3' -53.6 NC_005259.1 + 17456 0.66 0.852068
Target:  5'- cGAUGugCCaccGCCCacCGUGGUGA-CGCc -3'
miRNA:   3'- -CUACugGG---CGGGcuGUACUACUaGCG- -5'
23500 3' -53.6 NC_005259.1 + 45621 0.66 0.852068
Target:  5'- cGAUG-CCCGCCgGGCcgGGcag-CGCg -3'
miRNA:   3'- -CUACuGGGCGGgCUGuaCUacuaGCG- -5'
23500 3' -53.6 NC_005259.1 + 15931 0.66 0.843562
Target:  5'- cGAUGAaaCGCUCGGCGaaaugGAUGGUCa- -3'
miRNA:   3'- -CUACUggGCGGGCUGUa----CUACUAGcg -5'
23500 3' -53.6 NC_005259.1 + 13050 0.66 0.843562
Target:  5'- --cGGCCCGUUCuGCGcGAUGGUCGa -3'
miRNA:   3'- cuaCUGGGCGGGcUGUaCUACUAGCg -5'
23500 3' -53.6 NC_005259.1 + 156 0.66 0.834837
Target:  5'- --gGGCUCGCCCGGCGg---GGUCcgGCa -3'
miRNA:   3'- cuaCUGGGCGGGCUGUacuaCUAG--CG- -5'
23500 3' -53.6 NC_005259.1 + 16345 0.66 0.834837
Target:  5'- gGAUG-CCCGCacaaGACcgGA-GAUCGUg -3'
miRNA:   3'- -CUACuGGGCGgg--CUGuaCUaCUAGCG- -5'
23500 3' -53.6 NC_005259.1 + 15806 0.66 0.834837
Target:  5'- --cGA-CCGCCCGACAUccaaGGUGGU-GCu -3'
miRNA:   3'- cuaCUgGGCGGGCUGUA----CUACUAgCG- -5'
23500 3' -53.6 NC_005259.1 + 10720 0.67 0.825902
Target:  5'- -uUGGCCCGCauGAUGUcGGUGAUCa- -3'
miRNA:   3'- cuACUGGGCGggCUGUA-CUACUAGcg -5'
23500 3' -53.6 NC_005259.1 + 18727 0.67 0.825902
Target:  5'- --cGGgCCGCCCGGCAUcGGUaaGUCGUc -3'
miRNA:   3'- cuaCUgGGCGGGCUGUA-CUAc-UAGCG- -5'
23500 3' -53.6 NC_005259.1 + 65992 0.67 0.825902
Target:  5'- cGAgcAgCCGCUCGACGUGGUG--CGCa -3'
miRNA:   3'- -CUacUgGGCGGGCUGUACUACuaGCG- -5'
23500 3' -53.6 NC_005259.1 + 35029 0.67 0.816767
Target:  5'- --cGACUuggaaGCCCGAUAgccgGAUGAugUCGCc -3'
miRNA:   3'- cuaCUGGg----CGGGCUGUa---CUACU--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.