miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23500 3' -53.6 NC_005259.1 + 561 0.77 0.289276
Target:  5'- -cUGACCCGCaccaCGGCGUGggGGUCGa -3'
miRNA:   3'- cuACUGGGCGg---GCUGUACuaCUAGCg -5'
23500 3' -53.6 NC_005259.1 + 31112 0.77 0.275145
Target:  5'- cGAUGAgUCGCCCGAUGUcgccGAUGAUCGg -3'
miRNA:   3'- -CUACUgGGCGGGCUGUA----CUACUAGCg -5'
23500 3' -53.6 NC_005259.1 + 39134 0.76 0.31153
Target:  5'- cGGUGAgCUGCCCGAU---GUGAUCGCc -3'
miRNA:   3'- -CUACUgGGCGGGCUGuacUACUAGCG- -5'
23500 3' -53.6 NC_005259.1 + 38745 0.72 0.511953
Target:  5'- cGGUGGCCCGCCgcaGGCc-GGUGAgcugCGCg -3'
miRNA:   3'- -CUACUGGGCGGg--CUGuaCUACUa---GCG- -5'
23500 3' -53.6 NC_005259.1 + 42497 0.72 0.511953
Target:  5'- cGUGACCCGUCCGGCGguGUGGccaGCa -3'
miRNA:   3'- cUACUGGGCGGGCUGUacUACUag-CG- -5'
23500 3' -53.6 NC_005259.1 + 18966 0.7 0.618052
Target:  5'- gGGUGACCucgccgcguacauCGCCCGGCAcGA-GAUCGg -3'
miRNA:   3'- -CUACUGG-------------GCGGGCUGUaCUaCUAGCg -5'
23500 3' -53.6 NC_005259.1 + 52553 0.7 0.623511
Target:  5'- gGAUGugCgaGCCCGACAUGGucgaccggaccggccUGAgcgUCGCc -3'
miRNA:   3'- -CUACugGg-CGGGCUGUACU---------------ACU---AGCG- -5'
23500 3' -53.6 NC_005259.1 + 65219 0.7 0.630064
Target:  5'- uGAUGACCgGCCUGACcucgucgucAUGGaGAcccUCGCg -3'
miRNA:   3'- -CUACUGGgCGGGCUG---------UACUaCU---AGCG- -5'
23500 3' -53.6 NC_005259.1 + 29182 0.7 0.640986
Target:  5'- --cGACCCGaaCCCGugGggcgGAUGGuUCGCc -3'
miRNA:   3'- cuaCUGGGC--GGGCugUa---CUACU-AGCG- -5'
23500 3' -53.6 NC_005259.1 + 57811 0.69 0.716643
Target:  5'- --cGACgCCGCCCGcacGCAUGGccaGAUCGg -3'
miRNA:   3'- cuaCUG-GGCGGGC---UGUACUa--CUAGCg -5'
23500 3' -53.6 NC_005259.1 + 51832 0.69 0.684494
Target:  5'- --aGACCCGCCCGGu----UGAUCGg -3'
miRNA:   3'- cuaCUGGGCGGGCUguacuACUAGCg -5'
23500 3' -53.6 NC_005259.1 + 13739 0.68 0.737683
Target:  5'- uGAUGGCCCGCgaGAUAUGccaaGAccUCGCc -3'
miRNA:   3'- -CUACUGGGCGggCUGUACua--CU--AGCG- -5'
23500 3' -53.6 NC_005259.1 + 28744 0.68 0.737683
Target:  5'- gGGUuACgCGCCCGAgCGUGA-GAUCGUc -3'
miRNA:   3'- -CUAcUGgGCGGGCU-GUACUaCUAGCG- -5'
23500 3' -53.6 NC_005259.1 + 46367 0.68 0.772442
Target:  5'- cGAUGGCaCCGCCCGGCcccAUcucacgcagccgcgcGGUGAggGCa -3'
miRNA:   3'- -CUACUG-GGCGGGCUG---UA---------------CUACUagCG- -5'
23500 3' -53.6 NC_005259.1 + 37513 0.68 0.778417
Target:  5'- --cGAUgCUGCCCGACGaGAaGAUCGUc -3'
miRNA:   3'- cuaCUG-GGCGGGCUGUaCUaCUAGCG- -5'
23500 3' -53.6 NC_005259.1 + 43205 0.67 0.807441
Target:  5'- cGAUGucgacGCCCGCCUGACccgccgagcUGAUGAgcgaGCu -3'
miRNA:   3'- -CUAC-----UGGGCGGGCUGu--------ACUACUag--CG- -5'
23500 3' -53.6 NC_005259.1 + 35029 0.67 0.816767
Target:  5'- --cGACUuggaaGCCCGAUAgccgGAUGAugUCGCc -3'
miRNA:   3'- cuaCUGGg----CGGGCUGUa---CUACU--AGCG- -5'
23500 3' -53.6 NC_005259.1 + 63391 0.67 0.816767
Target:  5'- cGAUGGCCCaCgCCGACca-AUGGUUGCc -3'
miRNA:   3'- -CUACUGGGcG-GGCUGuacUACUAGCG- -5'
23500 3' -53.6 NC_005259.1 + 10720 0.67 0.825902
Target:  5'- -uUGGCCCGCauGAUGUcGGUGAUCa- -3'
miRNA:   3'- cuACUGGGCGggCUGUA-CUACUAGcg -5'
23500 3' -53.6 NC_005259.1 + 18727 0.67 0.825902
Target:  5'- --cGGgCCGCCCGGCAUcGGUaaGUCGUc -3'
miRNA:   3'- cuaCUgGGCGGGCUGUA-CUAc-UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.