Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23502 | 5' | -54.4 | NC_005259.1 | + | 48597 | 0.76 | 0.270001 |
Target: 5'- gCUUGUCGAGCGCgggcgcuACCGCCGUGCgCAc -3' miRNA: 3'- -GAGUAGUUCGUG-------UGGCGGCACGaGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 26206 | 0.74 | 0.338328 |
Target: 5'- -gCAU--GGC-CGCCGCCGUGUUCAGg -3' miRNA: 3'- gaGUAguUCGuGUGGCGGCACGAGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 1406 | 0.74 | 0.372107 |
Target: 5'- uCUCAUacgaccCGAGCACGgcauaCGUCGUGCUCGGg -3' miRNA: 3'- -GAGUA------GUUCGUGUg----GCGGCACGAGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 50402 | 0.73 | 0.417444 |
Target: 5'- gCUCGcCGAGCGCGCCGgugccuugaCCG-GCUCGGg -3' miRNA: 3'- -GAGUaGUUCGUGUGGC---------GGCaCGAGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 15875 | 0.72 | 0.435534 |
Target: 5'- uCUCAUCGGGCACACCGaaGagucgacUGCgCAGa -3' miRNA: 3'- -GAGUAGUUCGUGUGGCggC-------ACGaGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 12316 | 0.72 | 0.436499 |
Target: 5'- --uGUCGGuGCGCACCGCCGccaGCUCAc -3' miRNA: 3'- gagUAGUU-CGUGUGGCGGCa--CGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 56653 | 0.71 | 0.527847 |
Target: 5'- -gCAUCGAGgGCACCGCgCGUcacggGCUCGu -3' miRNA: 3'- gaGUAGUUCgUGUGGCG-GCA-----CGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 24570 | 0.7 | 0.538466 |
Target: 5'- aCUCGU---GgGCACCGCaCGUGCUCAa -3' miRNA: 3'- -GAGUAguuCgUGUGGCG-GCACGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 59125 | 0.7 | 0.559915 |
Target: 5'- -gCAUCGAGCAgAgCGUCGaGCUCGGc -3' miRNA: 3'- gaGUAGUUCGUgUgGCGGCaCGAGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 36769 | 0.7 | 0.569646 |
Target: 5'- -aCGUUAGGCGCguuGCCGCCGUccugaccGCUCGc -3' miRNA: 3'- gaGUAGUUCGUG---UGGCGGCA-------CGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 47280 | 0.69 | 0.603441 |
Target: 5'- -gCAcCGAGCAgACCGCCGUcGC-CGGa -3' miRNA: 3'- gaGUaGUUCGUgUGGCGGCA-CGaGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 19456 | 0.69 | 0.613307 |
Target: 5'- gUCAUCGAG---ACCGCCGUGCgcauccgUCAGu -3' miRNA: 3'- gAGUAGUUCgugUGGCGGCACG-------AGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 66178 | 0.68 | 0.65832 |
Target: 5'- gCUCAUC-GGCAcCGCUGCCgGUGCaguacgggUCAGg -3' miRNA: 3'- -GAGUAGuUCGU-GUGGCGG-CACG--------AGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 19834 | 0.68 | 0.669263 |
Target: 5'- aUCAUCGcGGC-UGCUGCCGcGCUCGGu -3' miRNA: 3'- gAGUAGU-UCGuGUGGCGGCaCGAGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 62376 | 0.68 | 0.676903 |
Target: 5'- gCUCAUCGAGUagcagauccaaaccGC-CCGCC-UGCUCGa -3' miRNA: 3'- -GAGUAGUUCG--------------UGuGGCGGcACGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 12973 | 0.68 | 0.680172 |
Target: 5'- -gCGUCGgaAGCGCccACCGUgGUGCUCGc -3' miRNA: 3'- gaGUAGU--UCGUG--UGGCGgCACGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 14843 | 0.68 | 0.712581 |
Target: 5'- -gCAUCGuGgACACgGUCGUGCUCGc -3' miRNA: 3'- gaGUAGUuCgUGUGgCGGCACGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 60134 | 0.67 | 0.743239 |
Target: 5'- cCUCGUCcuGCGCggccuugGCCGCCGc-CUCAGc -3' miRNA: 3'- -GAGUAGuuCGUG-------UGGCGGCacGAGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 26884 | 0.67 | 0.74428 |
Target: 5'- --aGUCGAGCACACCauCgGUGUUCAu -3' miRNA: 3'- gagUAGUUCGUGUGGc-GgCACGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 44546 | 0.67 | 0.754636 |
Target: 5'- aCUCAUgccgagaccggCAggcAGCGCGCCGaCCGgcagGCUCAu -3' miRNA: 3'- -GAGUA-----------GU---UCGUGUGGC-GGCa---CGAGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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