miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23502 5' -54.4 NC_005259.1 + 1406 0.74 0.372107
Target:  5'- uCUCAUacgaccCGAGCACGgcauaCGUCGUGCUCGGg -3'
miRNA:   3'- -GAGUA------GUUCGUGUg----GCGGCACGAGUC- -5'
23502 5' -54.4 NC_005259.1 + 2694 0.67 0.754636
Target:  5'- -gCAUCGAGgACaaggacgguuucACCGCCGaucUGCUCAa -3'
miRNA:   3'- gaGUAGUUCgUG------------UGGCGGC---ACGAGUc -5'
23502 5' -54.4 NC_005259.1 + 3498 0.66 0.80432
Target:  5'- cCUCAcgCGAccauGUGCGCCGCCGcGUUCAa -3'
miRNA:   3'- -GAGUa-GUU----CGUGUGGCGGCaCGAGUc -5'
23502 5' -54.4 NC_005259.1 + 5679 0.66 0.80432
Target:  5'- -aCAUCGccccGCACuGCCuGCUGUGCUCGu -3'
miRNA:   3'- gaGUAGUu---CGUG-UGG-CGGCACGAGUc -5'
23502 5' -54.4 NC_005259.1 + 8932 0.65 0.822095
Target:  5'- gCUCGUUugucgaucacgguGGGCGCGCCGuggacgggcaCCGUGC-CGGg -3'
miRNA:   3'- -GAGUAG-------------UUCGUGUGGC----------GGCACGaGUC- -5'
23502 5' -54.4 NC_005259.1 + 12316 0.72 0.436499
Target:  5'- --uGUCGGuGCGCACCGCCGccaGCUCAc -3'
miRNA:   3'- gagUAGUU-CGUGUGGCGGCa--CGAGUc -5'
23502 5' -54.4 NC_005259.1 + 12973 0.68 0.680172
Target:  5'- -gCGUCGgaAGCGCccACCGUgGUGCUCGc -3'
miRNA:   3'- gaGUAGU--UCGUG--UGGCGgCACGAGUc -5'
23502 5' -54.4 NC_005259.1 + 13455 0.66 0.774961
Target:  5'- -cCGUC-GGCGCGgCGCUGgUGCUCAc -3'
miRNA:   3'- gaGUAGuUCGUGUgGCGGC-ACGAGUc -5'
23502 5' -54.4 NC_005259.1 + 14843 0.68 0.712581
Target:  5'- -gCAUCGuGgACACgGUCGUGCUCGc -3'
miRNA:   3'- gaGUAGUuCgUGUGgCGGCACGAGUc -5'
23502 5' -54.4 NC_005259.1 + 15875 0.72 0.435534
Target:  5'- uCUCAUCGGGCACACCGaaGagucgacUGCgCAGa -3'
miRNA:   3'- -GAGUAGUUCGUGUGGCggC-------ACGaGUC- -5'
23502 5' -54.4 NC_005259.1 + 16430 0.66 0.78491
Target:  5'- -cCGUCGAGCggcccaaaccggGCACCGUCG-GCaUCGGu -3'
miRNA:   3'- gaGUAGUUCG------------UGUGGCGGCaCG-AGUC- -5'
23502 5' -54.4 NC_005259.1 + 19456 0.69 0.613307
Target:  5'- gUCAUCGAG---ACCGCCGUGCgcauccgUCAGu -3'
miRNA:   3'- gAGUAGUUCgugUGGCGGCACG-------AGUC- -5'
23502 5' -54.4 NC_005259.1 + 19834 0.68 0.669263
Target:  5'- aUCAUCGcGGC-UGCUGCCGcGCUCGGu -3'
miRNA:   3'- gAGUAGU-UCGuGUGGCGGCaCGAGUC- -5'
23502 5' -54.4 NC_005259.1 + 24570 0.7 0.538466
Target:  5'- aCUCGU---GgGCACCGCaCGUGCUCAa -3'
miRNA:   3'- -GAGUAguuCgUGUGGCG-GCACGAGUc -5'
23502 5' -54.4 NC_005259.1 + 26206 0.74 0.338328
Target:  5'- -gCAU--GGC-CGCCGCCGUGUUCAGg -3'
miRNA:   3'- gaGUAguUCGuGUGGCGGCACGAGUC- -5'
23502 5' -54.4 NC_005259.1 + 26884 0.67 0.74428
Target:  5'- --aGUCGAGCACACCauCgGUGUUCAu -3'
miRNA:   3'- gagUAGUUCGUGUGGc-GgCACGAGUc -5'
23502 5' -54.4 NC_005259.1 + 30957 0.66 0.794699
Target:  5'- gUCGcCGAGCACACCGaUgGUGUagCAGa -3'
miRNA:   3'- gAGUaGUUCGUGUGGC-GgCACGa-GUC- -5'
23502 5' -54.4 NC_005259.1 + 36769 0.7 0.569646
Target:  5'- -aCGUUAGGCGCguuGCCGCCGUccugaccGCUCGc -3'
miRNA:   3'- gaGUAGUUCGUG---UGGCGGCA-------CGAGUc -5'
23502 5' -54.4 NC_005259.1 + 39178 0.66 0.78491
Target:  5'- -aCGUCGAGCAggucgagaaaguCAUCGauCCGUGCUUGGa -3'
miRNA:   3'- gaGUAGUUCGU------------GUGGC--GGCACGAGUC- -5'
23502 5' -54.4 NC_005259.1 + 44546 0.67 0.754636
Target:  5'- aCUCAUgccgagaccggCAggcAGCGCGCCGaCCGgcagGCUCAu -3'
miRNA:   3'- -GAGUA-----------GU---UCGUGUGGC-GGCa---CGAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.