Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23502 | 5' | -54.4 | NC_005259.1 | + | 12316 | 0.72 | 0.436499 |
Target: 5'- --uGUCGGuGCGCACCGCCGccaGCUCAc -3' miRNA: 3'- gagUAGUU-CGUGUGGCGGCa--CGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 56653 | 0.71 | 0.527847 |
Target: 5'- -gCAUCGAGgGCACCGCgCGUcacggGCUCGu -3' miRNA: 3'- gaGUAGUUCgUGUGGCG-GCA-----CGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 24570 | 0.7 | 0.538466 |
Target: 5'- aCUCGU---GgGCACCGCaCGUGCUCAa -3' miRNA: 3'- -GAGUAguuCgUGUGGCG-GCACGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 59125 | 0.7 | 0.559915 |
Target: 5'- -gCAUCGAGCAgAgCGUCGaGCUCGGc -3' miRNA: 3'- gaGUAGUUCGUgUgGCGGCaCGAGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 36769 | 0.7 | 0.569646 |
Target: 5'- -aCGUUAGGCGCguuGCCGCCGUccugaccGCUCGc -3' miRNA: 3'- gaGUAGUUCGUG---UGGCGGCA-------CGAGUc -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 47280 | 0.69 | 0.603441 |
Target: 5'- -gCAcCGAGCAgACCGCCGUcGC-CGGa -3' miRNA: 3'- gaGUaGUUCGUgUGGCGGCA-CGaGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 19456 | 0.69 | 0.613307 |
Target: 5'- gUCAUCGAG---ACCGCCGUGCgcauccgUCAGu -3' miRNA: 3'- gAGUAGUUCgugUGGCGGCACG-------AGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 66178 | 0.68 | 0.65832 |
Target: 5'- gCUCAUC-GGCAcCGCUGCCgGUGCaguacgggUCAGg -3' miRNA: 3'- -GAGUAGuUCGU-GUGGCGG-CACG--------AGUC- -5' |
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23502 | 5' | -54.4 | NC_005259.1 | + | 8932 | 0.65 | 0.822095 |
Target: 5'- gCUCGUUugucgaucacgguGGGCGCGCCGuggacgggcaCCGUGC-CGGg -3' miRNA: 3'- -GAGUAG-------------UUCGUGUGGC----------GGCACGaGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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