miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23503 3' -58 NC_005259.1 + 66009 0.66 0.662203
Target:  5'- uGGUGCGcacccucGGGGCCGcAcguguugcgcgcGAGCUCGaCGUa -3'
miRNA:   3'- gUCGCGC-------UCCCGGC-U------------UUCGAGCaGCG- -5'
23503 3' -58 NC_005259.1 + 21920 0.66 0.662203
Target:  5'- cCAGCGCGAGGcaGUCGAggccaucGAGuCUCacuggCGCa -3'
miRNA:   3'- -GUCGCGCUCC--CGGCU-------UUC-GAGca---GCG- -5'
23503 3' -58 NC_005259.1 + 36121 0.66 0.65267
Target:  5'- gAGCGUaagcaguuGGGCCGccGGGCUgucCGUCGCc -3'
miRNA:   3'- gUCGCGcu------CCCGGCu-UUCGA---GCAGCG- -5'
23503 3' -58 NC_005259.1 + 32139 0.66 0.642061
Target:  5'- uGGCgGUGAugucGGGCUuauAGAGCUUGUCGUa -3'
miRNA:   3'- gUCG-CGCU----CCCGGc--UUUCGAGCAGCG- -5'
23503 3' -58 NC_005259.1 + 62869 0.66 0.631444
Target:  5'- uCGGCGCGAGguaGGCCGcucggucauuGAGCgaCGcCGCu -3'
miRNA:   3'- -GUCGCGCUC---CCGGCu---------UUCGa-GCaGCG- -5'
23503 3' -58 NC_005259.1 + 39444 0.66 0.631444
Target:  5'- gAGCGUGAucGGaCCGGagaaaacuggcGAGCcgUCGUCGCg -3'
miRNA:   3'- gUCGCGCU--CCcGGCU-----------UUCG--AGCAGCG- -5'
23503 3' -58 NC_005259.1 + 31906 0.67 0.599631
Target:  5'- cCGGCGCGAGcGCCucAAuCUCGUcaCGCa -3'
miRNA:   3'- -GUCGCGCUCcCGGcuUUcGAGCA--GCG- -5'
23503 3' -58 NC_005259.1 + 54566 0.67 0.599631
Target:  5'- -uGCGCGAGcuCaguGAGCUUGUCGCg -3'
miRNA:   3'- guCGCGCUCccGgcuUUCGAGCAGCG- -5'
23503 3' -58 NC_005259.1 + 27996 0.67 0.599631
Target:  5'- uGGUGCGGGuGCCGGG-GCgggGUCGCc -3'
miRNA:   3'- gUCGCGCUCcCGGCUUuCGag-CAGCG- -5'
23503 3' -58 NC_005259.1 + 26448 0.67 0.599631
Target:  5'- gGGCGgGccgguGGGCCGAuguggaacGAGCacacguagUUGUCGCg -3'
miRNA:   3'- gUCGCgCu----CCCGGCU--------UUCG--------AGCAGCG- -5'
23503 3' -58 NC_005259.1 + 58333 0.67 0.589067
Target:  5'- gGGCaGCGAGaucaggucgguGGCCucGGGCaCGUCGCa -3'
miRNA:   3'- gUCG-CGCUC-----------CCGGcuUUCGaGCAGCG- -5'
23503 3' -58 NC_005259.1 + 23312 0.67 0.588013
Target:  5'- cCGGCGCGGucGGugucGCCGAGccggauuacaucgGGCUCGagGCu -3'
miRNA:   3'- -GUCGCGCU--CC----CGGCUU-------------UCGAGCagCG- -5'
23503 3' -58 NC_005259.1 + 46276 0.67 0.582744
Target:  5'- -uGCGCGAgguucugcaacagcgGGGCCGccguGGCUgCGUUGUu -3'
miRNA:   3'- guCGCGCU---------------CCCGGCuu--UCGA-GCAGCG- -5'
23503 3' -58 NC_005259.1 + 56651 0.67 0.578537
Target:  5'- aAGCauCGAGGGCaccgcgCGucacGGGCUCGUUGCg -3'
miRNA:   3'- gUCGc-GCUCCCG------GCu---UUCGAGCAGCG- -5'
23503 3' -58 NC_005259.1 + 29402 0.67 0.578537
Target:  5'- ----cCGAGGGCCucggcGAGCUCGUgCGCg -3'
miRNA:   3'- gucgcGCUCCCGGcu---UUCGAGCA-GCG- -5'
23503 3' -58 NC_005259.1 + 9497 0.67 0.578537
Target:  5'- gAG-GCGAGGaaCGugcGCUCGUCGCg -3'
miRNA:   3'- gUCgCGCUCCcgGCuuuCGAGCAGCG- -5'
23503 3' -58 NC_005259.1 + 8774 0.67 0.578537
Target:  5'- cCAGCGCGGcGGUgauGAGCUCGgccCGCu -3'
miRNA:   3'- -GUCGCGCUcCCGgcuUUCGAGCa--GCG- -5'
23503 3' -58 NC_005259.1 + 51437 0.67 0.557608
Target:  5'- gGGCGggccaCGGGGccucgcGCCGAuaGAGCUUGUUGCc -3'
miRNA:   3'- gUCGC-----GCUCC------CGGCU--UUCGAGCAGCG- -5'
23503 3' -58 NC_005259.1 + 32898 0.67 0.557608
Target:  5'- gGGgGCGAGGGugagccacCCGGcccGCUCGggCGCg -3'
miRNA:   3'- gUCgCGCUCCC--------GGCUuu-CGAGCa-GCG- -5'
23503 3' -58 NC_005259.1 + 48501 0.67 0.547223
Target:  5'- -cGCGCuuGAGGGCCGcGA-CUUGcCGCa -3'
miRNA:   3'- guCGCG--CUCCCGGCuUUcGAGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.