Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23503 | 3' | -58 | NC_005259.1 | + | 1901 | 0.68 | 0.506365 |
Target: 5'- -cGCGCGAGcuGCCGAggAAGCgCGcCGCc -3' miRNA: 3'- guCGCGCUCc-CGGCU--UUCGaGCaGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 11072 | 0.68 | 0.49635 |
Target: 5'- uCAGCGUGGaaGCCGuacGGCUCGaccUCGCa -3' miRNA: 3'- -GUCGCGCUccCGGCuu-UCGAGC---AGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 55550 | 0.68 | 0.487413 |
Target: 5'- uGGCGuCGAGGauGCCGAAAGCgagcaggaacaucacCGcCGCg -3' miRNA: 3'- gUCGC-GCUCC--CGGCUUUCGa--------------GCaGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 17768 | 0.68 | 0.486425 |
Target: 5'- -cGCGCGccGGGCCGAgcGCaccgagCGUgCGCa -3' miRNA: 3'- guCGCGCu-CCCGGCUuuCGa-----GCA-GCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 58687 | 0.69 | 0.457239 |
Target: 5'- cCAuCGCG-GGGUCG---GCUCGUCGCc -3' miRNA: 3'- -GUcGCGCuCCCGGCuuuCGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 4318 | 0.69 | 0.457239 |
Target: 5'- gAGCGCGAccaaccucGuGCCGGAc-CUCGUCGCg -3' miRNA: 3'- gUCGCGCU--------CcCGGCUUucGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 33903 | 0.69 | 0.44772 |
Target: 5'- -cGCGCGAcGGGCCGAGaccGGCcaCGgUGCg -3' miRNA: 3'- guCGCGCU-CCCGGCUU---UCGa-GCaGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 41909 | 0.69 | 0.44583 |
Target: 5'- gAGCGCGGGaGCuCGAAGGUgacccgguagaaCGUCGCu -3' miRNA: 3'- gUCGCGCUCcCG-GCUUUCGa-----------GCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 21245 | 0.7 | 0.429018 |
Target: 5'- gCAGCGCGcGGGUUcugGAAAGCccauggUCGUCGg -3' miRNA: 3'- -GUCGCGCuCCCGG---CUUUCG------AGCAGCg -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 58583 | 0.7 | 0.423498 |
Target: 5'- gCGGCGCGGcugccGGGCCGGAucuuuucgagcgccuGGCUgaUGUCGg -3' miRNA: 3'- -GUCGCGCU-----CCCGGCUU---------------UCGA--GCAGCg -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 10626 | 0.7 | 0.401851 |
Target: 5'- gGGUGCGucGaGGCCGAAcAGCUUGgccUCGCg -3' miRNA: 3'- gUCGCGCu-C-CCGGCUU-UCGAGC---AGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 27426 | 0.71 | 0.358258 |
Target: 5'- --cCGCGAGGaauuggcucacgcGUCGcauGAGCUCGUCGCg -3' miRNA: 3'- gucGCGCUCC-------------CGGCu--UUCGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 27836 | 0.71 | 0.334989 |
Target: 5'- -uGCGCGAGguaGGCCGcGAGgUCG-CGCg -3' miRNA: 3'- guCGCGCUC---CCGGCuUUCgAGCaGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 24743 | 0.71 | 0.334989 |
Target: 5'- gCGGUGUGGGGuGCCGAGGcGCUCaUCGa -3' miRNA: 3'- -GUCGCGCUCC-CGGCUUU-CGAGcAGCg -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 60519 | 0.71 | 0.334207 |
Target: 5'- gUAGUGCGccauggccGGGCCGGGAcgcagccGCUCGUCGg -3' miRNA: 3'- -GUCGCGCu-------CCCGGCUUU-------CGAGCAGCg -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 36056 | 0.72 | 0.327226 |
Target: 5'- -cGCGCGAGcaccaccuGCUGuguGCUCGUCGCg -3' miRNA: 3'- guCGCGCUCc-------CGGCuuuCGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 57028 | 0.72 | 0.312101 |
Target: 5'- uCGGCGCGguGGGGUCGca--CUCGUCGUa -3' miRNA: 3'- -GUCGCGC--UCCCGGCuuucGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 11802 | 0.73 | 0.250633 |
Target: 5'- gGGCGCGAc--CCGcuuGAGCUCGUCGCu -3' miRNA: 3'- gUCGCGCUcccGGCu--UUCGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 64939 | 0.74 | 0.232483 |
Target: 5'- cCAGCGCGAGGGUgGccGGgUUGUCGa -3' miRNA: 3'- -GUCGCGCUCCCGgCuuUCgAGCAGCg -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 16500 | 0.75 | 0.213263 |
Target: 5'- -cGCGCGcauGGCCGAGAGCgaggcgcugcgagCGUCGCu -3' miRNA: 3'- guCGCGCuc-CCGGCUUUCGa------------GCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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