Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23503 | 5' | -53.5 | NC_005259.1 | + | 10346 | 0.66 | 0.871034 |
Target: 5'- cGGCGGCAgcgggcucgACAUCGggcucggaaguaucCGUGUcgauagaUCCCGCa -3' miRNA: 3'- uUCGCUGU---------UGUAGCa-------------GCGCA-------AGGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 16149 | 0.66 | 0.86866 |
Target: 5'- --aCGACGAgGUUGUgGUGUccacUCCCGUg -3' miRNA: 3'- uucGCUGUUgUAGCAgCGCA----AGGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 11780 | 0.66 | 0.86866 |
Target: 5'- cGGCGAgGgagucccacACAUCGggCGCGa-CCCGCu -3' miRNA: 3'- uUCGCUgU---------UGUAGCa-GCGCaaGGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 48450 | 0.66 | 0.866264 |
Target: 5'- cAGCGGCAgcGCGUUccaccgcgcgccggGUCGCGUcggCCUGUu -3' miRNA: 3'- uUCGCUGU--UGUAG--------------CAGCGCAa--GGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 46305 | 0.66 | 0.860589 |
Target: 5'- -cGUGGCuGCGUUGuUCGCGgcCCCGa -3' miRNA: 3'- uuCGCUGuUGUAGC-AGCGCaaGGGCg -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 12540 | 0.66 | 0.860589 |
Target: 5'- cGAGCGAgccccaCGGCAUUGcCGgGguggCCCGCc -3' miRNA: 3'- -UUCGCU------GUUGUAGCaGCgCaa--GGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 53806 | 0.66 | 0.843743 |
Target: 5'- cGGUGAgGACAUCGUCGgaaGUcgggaUCUCGUc -3' miRNA: 3'- uUCGCUgUUGUAGCAGCg--CA-----AGGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 67253 | 0.66 | 0.834984 |
Target: 5'- uGAGCGgggccucggGCAGCcgUGUCGCGUcaaaccacUUCUGCu -3' miRNA: 3'- -UUCGC---------UGUUGuaGCAGCGCA--------AGGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 36761 | 0.67 | 0.826014 |
Target: 5'- uGAGCGugA-CGUUaggCGCGUUgCCGCc -3' miRNA: 3'- -UUCGCugUuGUAGca-GCGCAAgGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 55764 | 0.67 | 0.816841 |
Target: 5'- -uGCG-CAGCcgCGUaCGCGUcgagcucggCCCGCu -3' miRNA: 3'- uuCGCuGUUGuaGCA-GCGCAa--------GGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 938 | 0.67 | 0.807476 |
Target: 5'- -cGCGACAGCGgaaaaGUCGgGcagCUCGCg -3' miRNA: 3'- uuCGCUGUUGUag---CAGCgCaa-GGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 27391 | 0.68 | 0.77932 |
Target: 5'- cGGCGGCggUGUCGgcaGCGgcggcagcucggugCCCGCg -3' miRNA: 3'- uUCGCUGuuGUAGCag-CGCaa------------GGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 28756 | 0.68 | 0.767282 |
Target: 5'- cGAGCGugAG-AUCGUCGCcggugccgacgagGUaCCCGCc -3' miRNA: 3'- -UUCGCugUUgUAGCAGCG-------------CAaGGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 53461 | 0.68 | 0.758122 |
Target: 5'- cGGCGGCuGGC-UCGUCGUccggCCCGCc -3' miRNA: 3'- uUCGCUG-UUGuAGCAGCGcaa-GGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 43199 | 0.68 | 0.737406 |
Target: 5'- cGGCGGCGAUGUCGaCGCccgccugaCCCGCc -3' miRNA: 3'- uUCGCUGUUGUAGCaGCGcaa-----GGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 14041 | 0.69 | 0.705572 |
Target: 5'- cGAGCGGCAgcGCAUCGUCgGCGacgagaCCaGCa -3' miRNA: 3'- -UUCGCUGU--UGUAGCAG-CGCaag---GG-CG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 5749 | 0.69 | 0.694803 |
Target: 5'- cAAGCGGCGagcugccugaaACAcCGUUGUGUUCCC-Cg -3' miRNA: 3'- -UUCGCUGU-----------UGUaGCAGCGCAAGGGcG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 59311 | 0.69 | 0.673095 |
Target: 5'- uGGCGGCAGCggCGagcucagccUCGCGUUUcgcuaCCGCa -3' miRNA: 3'- uUCGCUGUUGuaGC---------AGCGCAAG-----GGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 43869 | 0.71 | 0.585542 |
Target: 5'- -cGUGACGACAcCGgcaGCGUUgCCGCc -3' miRNA: 3'- uuCGCUGUUGUaGCag-CGCAAgGGCG- -5' |
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23503 | 5' | -53.5 | NC_005259.1 | + | 3892 | 0.71 | 0.563859 |
Target: 5'- cAGCG-CGACAUCGUCGCcaUgCUGCc -3' miRNA: 3'- uUCGCuGUUGUAGCAGCGcaAgGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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