miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23503 5' -53.5 NC_005259.1 + 10346 0.66 0.871034
Target:  5'- cGGCGGCAgcgggcucgACAUCGggcucggaaguaucCGUGUcgauagaUCCCGCa -3'
miRNA:   3'- uUCGCUGU---------UGUAGCa-------------GCGCA-------AGGGCG- -5'
23503 5' -53.5 NC_005259.1 + 11780 0.66 0.86866
Target:  5'- cGGCGAgGgagucccacACAUCGggCGCGa-CCCGCu -3'
miRNA:   3'- uUCGCUgU---------UGUAGCa-GCGCaaGGGCG- -5'
23503 5' -53.5 NC_005259.1 + 16149 0.66 0.86866
Target:  5'- --aCGACGAgGUUGUgGUGUccacUCCCGUg -3'
miRNA:   3'- uucGCUGUUgUAGCAgCGCA----AGGGCG- -5'
23503 5' -53.5 NC_005259.1 + 48450 0.66 0.866264
Target:  5'- cAGCGGCAgcGCGUUccaccgcgcgccggGUCGCGUcggCCUGUu -3'
miRNA:   3'- uUCGCUGU--UGUAG--------------CAGCGCAa--GGGCG- -5'
23503 5' -53.5 NC_005259.1 + 46305 0.66 0.860589
Target:  5'- -cGUGGCuGCGUUGuUCGCGgcCCCGa -3'
miRNA:   3'- uuCGCUGuUGUAGC-AGCGCaaGGGCg -5'
23503 5' -53.5 NC_005259.1 + 12540 0.66 0.860589
Target:  5'- cGAGCGAgccccaCGGCAUUGcCGgGguggCCCGCc -3'
miRNA:   3'- -UUCGCU------GUUGUAGCaGCgCaa--GGGCG- -5'
23503 5' -53.5 NC_005259.1 + 53806 0.66 0.843743
Target:  5'- cGGUGAgGACAUCGUCGgaaGUcgggaUCUCGUc -3'
miRNA:   3'- uUCGCUgUUGUAGCAGCg--CA-----AGGGCG- -5'
23503 5' -53.5 NC_005259.1 + 67253 0.66 0.834984
Target:  5'- uGAGCGgggccucggGCAGCcgUGUCGCGUcaaaccacUUCUGCu -3'
miRNA:   3'- -UUCGC---------UGUUGuaGCAGCGCA--------AGGGCG- -5'
23503 5' -53.5 NC_005259.1 + 36761 0.67 0.826014
Target:  5'- uGAGCGugA-CGUUaggCGCGUUgCCGCc -3'
miRNA:   3'- -UUCGCugUuGUAGca-GCGCAAgGGCG- -5'
23503 5' -53.5 NC_005259.1 + 55764 0.67 0.816841
Target:  5'- -uGCG-CAGCcgCGUaCGCGUcgagcucggCCCGCu -3'
miRNA:   3'- uuCGCuGUUGuaGCA-GCGCAa--------GGGCG- -5'
23503 5' -53.5 NC_005259.1 + 938 0.67 0.807476
Target:  5'- -cGCGACAGCGgaaaaGUCGgGcagCUCGCg -3'
miRNA:   3'- uuCGCUGUUGUag---CAGCgCaa-GGGCG- -5'
23503 5' -53.5 NC_005259.1 + 27391 0.68 0.77932
Target:  5'- cGGCGGCggUGUCGgcaGCGgcggcagcucggugCCCGCg -3'
miRNA:   3'- uUCGCUGuuGUAGCag-CGCaa------------GGGCG- -5'
23503 5' -53.5 NC_005259.1 + 28756 0.68 0.767282
Target:  5'- cGAGCGugAG-AUCGUCGCcggugccgacgagGUaCCCGCc -3'
miRNA:   3'- -UUCGCugUUgUAGCAGCG-------------CAaGGGCG- -5'
23503 5' -53.5 NC_005259.1 + 53461 0.68 0.758122
Target:  5'- cGGCGGCuGGC-UCGUCGUccggCCCGCc -3'
miRNA:   3'- uUCGCUG-UUGuAGCAGCGcaa-GGGCG- -5'
23503 5' -53.5 NC_005259.1 + 43199 0.68 0.737406
Target:  5'- cGGCGGCGAUGUCGaCGCccgccugaCCCGCc -3'
miRNA:   3'- uUCGCUGUUGUAGCaGCGcaa-----GGGCG- -5'
23503 5' -53.5 NC_005259.1 + 14041 0.69 0.705572
Target:  5'- cGAGCGGCAgcGCAUCGUCgGCGacgagaCCaGCa -3'
miRNA:   3'- -UUCGCUGU--UGUAGCAG-CGCaag---GG-CG- -5'
23503 5' -53.5 NC_005259.1 + 5749 0.69 0.694803
Target:  5'- cAAGCGGCGagcugccugaaACAcCGUUGUGUUCCC-Cg -3'
miRNA:   3'- -UUCGCUGU-----------UGUaGCAGCGCAAGGGcG- -5'
23503 5' -53.5 NC_005259.1 + 59311 0.69 0.673095
Target:  5'- uGGCGGCAGCggCGagcucagccUCGCGUUUcgcuaCCGCa -3'
miRNA:   3'- uUCGCUGUUGuaGC---------AGCGCAAG-----GGCG- -5'
23503 5' -53.5 NC_005259.1 + 43869 0.71 0.585542
Target:  5'- -cGUGACGACAcCGgcaGCGUUgCCGCc -3'
miRNA:   3'- uuCGCUGUUGUaGCag-CGCAAgGGCG- -5'
23503 5' -53.5 NC_005259.1 + 3892 0.71 0.563859
Target:  5'- cAGCG-CGACAUCGUCGCcaUgCUGCc -3'
miRNA:   3'- uUCGCuGUUGUAGCAGCGcaAgGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.