miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23504 3' -56 NC_005259.1 + 68121 0.78 0.167145
Target:  5'- -gGGUCGaGAGCAgCGGCGAGCUCGGCa -3'
miRNA:   3'- uaCUGGC-CUUGUaGCCGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 67835 0.7 0.498349
Target:  5'- -cGACCGGcAGCc-CGGUGAGCgggUCGACc -3'
miRNA:   3'- uaCUGGCC-UUGuaGCCGCUCG---AGCUG- -5'
23504 3' -56 NC_005259.1 + 67788 0.66 0.690627
Target:  5'- gGUGACCuuguuGGcACcgCGuGCGAGCUUGAg -3'
miRNA:   3'- -UACUGG-----CCuUGuaGC-CGCUCGAGCUg -5'
23504 3' -56 NC_005259.1 + 66942 0.74 0.295315
Target:  5'- gGUGAgCGGGACAcCGGCGAGCUg--- -3'
miRNA:   3'- -UACUgGCCUUGUaGCCGCUCGAgcug -5'
23504 3' -56 NC_005259.1 + 66024 0.68 0.571767
Target:  5'- -gGGCCGc-ACGUguugCGcGCGAGCUCGACg -3'
miRNA:   3'- uaCUGGCcuUGUA----GC-CGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 63657 0.67 0.658305
Target:  5'- cUGGCCGGGACGcCGGacaccuCGGGCacCGGCg -3'
miRNA:   3'- uACUGGCCUUGUaGCC------GCUCGa-GCUG- -5'
23504 3' -56 NC_005259.1 + 62771 0.74 0.295315
Target:  5'- -gGGCCGGAACGUCGcGC-AGCUUGGu -3'
miRNA:   3'- uaCUGGCCUUGUAGC-CGcUCGAGCUg -5'
23504 3' -56 NC_005259.1 + 61914 0.67 0.636622
Target:  5'- --cGCCGGucguCGUCGGC-AGCUCGGu -3'
miRNA:   3'- uacUGGCCuu--GUAGCCGcUCGAGCUg -5'
23504 3' -56 NC_005259.1 + 60813 0.73 0.310147
Target:  5'- -aGGCCGGAAauCGUCGGCGAuGCU-GGCc -3'
miRNA:   3'- uaCUGGCCUU--GUAGCCGCU-CGAgCUG- -5'
23504 3' -56 NC_005259.1 + 60072 0.66 0.747367
Target:  5'- -aGGCuCGGGcgGC-UCgccgacuuucucgauGGCGAGCUCGACc -3'
miRNA:   3'- uaCUG-GCCU--UGuAG---------------CCGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 58969 0.67 0.669116
Target:  5'- -aGGUCGGGcagcucgucgGCGaCGGCGAGCUUGGCc -3'
miRNA:   3'- uaCUGGCCU----------UGUaGCCGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 58784 0.68 0.60842
Target:  5'- uGUGcGCCGGucgaggcggugauuGCcUCGGCGGGCUCGcGCu -3'
miRNA:   3'- -UAC-UGGCCu-------------UGuAGCCGCUCGAGC-UG- -5'
23504 3' -56 NC_005259.1 + 56308 0.66 0.722456
Target:  5'- cGUGGCCGGAcccuCGUCGccguCGAGCaaucCGACu -3'
miRNA:   3'- -UACUGGCCUu---GUAGCc---GCUCGa---GCUG- -5'
23504 3' -56 NC_005259.1 + 54488 0.7 0.488187
Target:  5'- --cGCCGaGGGuCAUCGGCGGGCauggCGGCg -3'
miRNA:   3'- uacUGGC-CUU-GUAGCCGCUCGa---GCUG- -5'
23504 3' -56 NC_005259.1 + 53407 0.68 0.582504
Target:  5'- -gGACCGGGGCGguUCuGCGuAGCgCGACu -3'
miRNA:   3'- uaCUGGCCUUGU--AGcCGC-UCGaGCUG- -5'
23504 3' -56 NC_005259.1 + 50424 0.69 0.561078
Target:  5'- uUGACCGGcucgGGCAgCGGUgcGGGCUCGGg -3'
miRNA:   3'- uACUGGCC----UUGUaGCCG--CUCGAGCUg -5'
23504 3' -56 NC_005259.1 + 50282 0.66 0.743257
Target:  5'- gGUGGCgGGAACGUCGuGCacGCUCuGCc -3'
miRNA:   3'- -UACUGgCCUUGUAGC-CGcuCGAGcUG- -5'
23504 3' -56 NC_005259.1 + 48473 0.66 0.711919
Target:  5'- --cGCCGGGucGCGUCGGCcuguucCUCGACg -3'
miRNA:   3'- uacUGGCCU--UGUAGCCGcuc---GAGCUG- -5'
23504 3' -56 NC_005259.1 + 47886 0.69 0.539873
Target:  5'- uUGGCCGGGucaGCGUCGGCucguuGAGCgccUUGAUg -3'
miRNA:   3'- uACUGGCCU---UGUAGCCG-----CUCG---AGCUG- -5'
23504 3' -56 NC_005259.1 + 46647 0.72 0.383799
Target:  5'- cAUGGCCacacGGcuGCGguugagguucUCGGCGAGCUCGGCc -3'
miRNA:   3'- -UACUGG----CCu-UGU----------AGCCGCUCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.