Results 1 - 20 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23504 | 3' | -56 | NC_005259.1 | + | 3297 | 0.69 | 0.539873 |
Target: 5'- --cGCCGGucCcUCGGCGAGCgcugcgUCGACg -3' miRNA: 3'- uacUGGCCuuGuAGCCGCUCG------AGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 4130 | 0.71 | 0.438946 |
Target: 5'- cGUGGCCaaGAcCGUCGGCGAGUUCaagGACg -3' miRNA: 3'- -UACUGGc-CUuGUAGCCGCUCGAG---CUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 5632 | 0.75 | 0.24776 |
Target: 5'- -cGACCGGAuCGUgccCGGCGAGgaCGGCg -3' miRNA: 3'- uaCUGGCCUuGUA---GCCGCUCgaGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 5954 | 0.66 | 0.690627 |
Target: 5'- -cGAgCGGGACuUCuGCGGGC-CGACc -3' miRNA: 3'- uaCUgGCCUUGuAGcCGCUCGaGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 7627 | 0.7 | 0.468164 |
Target: 5'- -gGGCCGGAccuacacCGUCGcCGAGUUCGACc -3' miRNA: 3'- uaCUGGCCUu------GUAGCcGCUCGAGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 8377 | 0.74 | 0.302661 |
Target: 5'- -cGGCCucGGCAUCGGCGAGagcCUCGGCg -3' miRNA: 3'- uaCUGGccUUGUAGCCGCUC---GAGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 8770 | 0.66 | 0.722456 |
Target: 5'- uUGGCCaGcGCggCGGUgauGAGCUCGGCc -3' miRNA: 3'- uACUGGcCuUGuaGCCG---CUCGAGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 8973 | 0.66 | 0.711919 |
Target: 5'- cGUG-CCGGGACGUaGGUGccAGCggCGACg -3' miRNA: 3'- -UACuGGCCUUGUAgCCGC--UCGa-GCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 9355 | 0.71 | 0.43799 |
Target: 5'- gAUGACCgucuguaGGucguAC-UCGGCGAGCUCGGa -3' miRNA: 3'- -UACUGG-------CCu---UGuAGCCGCUCGAGCUg -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 9564 | 0.66 | 0.701306 |
Target: 5'- -cGACC---GCGUCGGCGAgguGCUCGuCa -3' miRNA: 3'- uaCUGGccuUGUAGCCGCU---CGAGCuG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 10329 | 0.68 | 0.582504 |
Target: 5'- -gGGCuCGGcGACGggcUCGGCGgcagcgGGCUCGACa -3' miRNA: 3'- uaCUG-GCC-UUGU---AGCCGC------UCGAGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 10413 | 0.8 | 0.117182 |
Target: 5'- -aGGCCcuuGAGCAccguccUCGGCGAGCUCGACa -3' miRNA: 3'- uaCUGGc--CUUGU------AGCCGCUCGAGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 11419 | 0.68 | 0.593281 |
Target: 5'- cGUGGCCGGuGCAaCGGgGAuGCUUGGg -3' miRNA: 3'- -UACUGGCCuUGUaGCCgCU-CGAGCUg -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 11569 | 0.69 | 0.539873 |
Target: 5'- uUGAUCGGuAGCAaaaUCGuaGCGGGCUUGGCc -3' miRNA: 3'- uACUGGCC-UUGU---AGC--CGCUCGAGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 12369 | 0.68 | 0.625769 |
Target: 5'- -cGACCGaGGuaGUCGGCGAGagCGGCa -3' miRNA: 3'- uaCUGGC-CUugUAGCCGCUCgaGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 17334 | 0.71 | 0.398954 |
Target: 5'- gGUGuGCCGGucaacgucgccgucGAgGUCGGCG-GCUCGGCg -3' miRNA: 3'- -UAC-UGGCC--------------UUgUAGCCGCuCGAGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 18739 | 0.68 | 0.582504 |
Target: 5'- --cAUCGGuaaguCGUCGGUGGuGCUCGACa -3' miRNA: 3'- uacUGGCCuu---GUAGCCGCU-CGAGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 19949 | 0.68 | 0.60409 |
Target: 5'- cGUGugCGuccGCAaCGGCG-GCUCGGCg -3' miRNA: 3'- -UACugGCcu-UGUaGCCGCuCGAGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 24226 | 0.68 | 0.571767 |
Target: 5'- cGUGACCGGcggggccgaGGCAc--GCGAGUUCGGCg -3' miRNA: 3'- -UACUGGCC---------UUGUagcCGCUCGAGCUG- -5' |
|||||||
23504 | 3' | -56 | NC_005259.1 | + | 24474 | 0.66 | 0.737058 |
Target: 5'- -cGACCGGAgaGCucguccUCGGCGAugucaagaccaccaaGgUCGACa -3' miRNA: 3'- uaCUGGCCU--UGu-----AGCCGCU---------------CgAGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home