miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23504 3' -56 NC_005259.1 + 26639 0.68 0.625769
Target:  5'- gAUGGCCuGGcguGCGcUCGGCaGGUUCGGCg -3'
miRNA:   3'- -UACUGG-CCu--UGU-AGCCGcUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 27385 0.71 0.42944
Target:  5'- gGUGACCGGcggcggugucGGCAgCGGCGgcAGCUCGGu -3'
miRNA:   3'- -UACUGGCC----------UUGUaGCCGC--UCGAGCUg -5'
23504 3' -56 NC_005259.1 + 29400 0.74 0.281041
Target:  5'- --cACCGaGGGCcUCGGCGAGCUCGuGCg -3'
miRNA:   3'- uacUGGC-CUUGuAGCCGCUCGAGC-UG- -5'
23504 3' -56 NC_005259.1 + 31794 0.67 0.636622
Target:  5'- uUGACCGcguCGUCauCGAGCUCGACc -3'
miRNA:   3'- uACUGGCcuuGUAGccGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 34174 0.67 0.636622
Target:  5'- aGUG-CCGGAACAcaccgGGCaguGGCUCGGCa -3'
miRNA:   3'- -UACuGGCCUUGUag---CCGc--UCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 36002 0.67 0.636622
Target:  5'- -aGGCCGGAcuGCAcCGagguggccaGCGAGgUCGACa -3'
miRNA:   3'- uaCUGGCCU--UGUaGC---------CGCUCgAGCUG- -5'
23504 3' -56 NC_005259.1 + 39454 0.66 0.690627
Target:  5'- -gGACCGGAGaaaacUGGCGAGCcgUCGuCg -3'
miRNA:   3'- uaCUGGCCUUgua--GCCGCUCG--AGCuG- -5'
23504 3' -56 NC_005259.1 + 40884 0.66 0.711919
Target:  5'- --cACCGGccACcgUGGCGGGgUCGGCa -3'
miRNA:   3'- uacUGGCCu-UGuaGCCGCUCgAGCUG- -5'
23504 3' -56 NC_005259.1 + 41783 0.74 0.302661
Target:  5'- --cACCGG--CAUCGGCGAGCagUCGGCa -3'
miRNA:   3'- uacUGGCCuuGUAGCCGCUCG--AGCUG- -5'
23504 3' -56 NC_005259.1 + 42550 0.69 0.539873
Target:  5'- gGUGGCgGGcAGC-UCGGCGAGCagccggucgucaUCGAUa -3'
miRNA:   3'- -UACUGgCC-UUGuAGCCGCUCG------------AGCUG- -5'
23504 3' -56 NC_005259.1 + 43578 0.66 0.732905
Target:  5'- gAUGACCuuGAGCAgcacUCGGaCGAGCaagUUGACg -3'
miRNA:   3'- -UACUGGc-CUUGU----AGCC-GCUCG---AGCUG- -5'
23504 3' -56 NC_005259.1 + 46647 0.72 0.383799
Target:  5'- cAUGGCCacacGGcuGCGguugagguucUCGGCGAGCUCGGCc -3'
miRNA:   3'- -UACUGG----CCu-UGU----------AGCCGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 47886 0.69 0.539873
Target:  5'- uUGGCCGGGucaGCGUCGGCucguuGAGCgccUUGAUg -3'
miRNA:   3'- uACUGGCCU---UGUAGCCG-----CUCG---AGCUG- -5'
23504 3' -56 NC_005259.1 + 48473 0.66 0.711919
Target:  5'- --cGCCGGGucGCGUCGGCcuguucCUCGACg -3'
miRNA:   3'- uacUGGCCU--UGUAGCCGcuc---GAGCUG- -5'
23504 3' -56 NC_005259.1 + 50282 0.66 0.743257
Target:  5'- gGUGGCgGGAACGUCGuGCacGCUCuGCc -3'
miRNA:   3'- -UACUGgCCUUGUAGC-CGcuCGAGcUG- -5'
23504 3' -56 NC_005259.1 + 50424 0.69 0.561078
Target:  5'- uUGACCGGcucgGGCAgCGGUgcGGGCUCGGg -3'
miRNA:   3'- uACUGGCC----UUGUaGCCG--CUCGAGCUg -5'
23504 3' -56 NC_005259.1 + 53407 0.68 0.582504
Target:  5'- -gGACCGGGGCGguUCuGCGuAGCgCGACu -3'
miRNA:   3'- uaCUGGCCUUGU--AGcCGC-UCGaGCUG- -5'
23504 3' -56 NC_005259.1 + 54488 0.7 0.488187
Target:  5'- --cGCCGaGGGuCAUCGGCGGGCauggCGGCg -3'
miRNA:   3'- uacUGGC-CUU-GUAGCCGCUCGa---GCUG- -5'
23504 3' -56 NC_005259.1 + 56308 0.66 0.722456
Target:  5'- cGUGGCCGGAcccuCGUCGccguCGAGCaaucCGACu -3'
miRNA:   3'- -UACUGGCCUu---GUAGCc---GCUCGa---GCUG- -5'
23504 3' -56 NC_005259.1 + 58784 0.68 0.60842
Target:  5'- uGUGcGCCGGucgaggcggugauuGCcUCGGCGGGCUCGcGCu -3'
miRNA:   3'- -UAC-UGGCCu-------------UGuAGCCGCUCGAGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.