miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23504 3' -56 NC_005259.1 + 47886 0.69 0.539873
Target:  5'- uUGGCCGGGucaGCGUCGGCucguuGAGCgccUUGAUg -3'
miRNA:   3'- uACUGGCCU---UGUAGCCG-----CUCG---AGCUG- -5'
23504 3' -56 NC_005259.1 + 50424 0.69 0.561078
Target:  5'- uUGACCGGcucgGGCAgCGGUgcGGGCUCGGg -3'
miRNA:   3'- uACUGGCC----UUGUaGCCG--CUCGAGCUg -5'
23504 3' -56 NC_005259.1 + 24226 0.68 0.571767
Target:  5'- cGUGACCGGcggggccgaGGCAc--GCGAGUUCGGCg -3'
miRNA:   3'- -UACUGGCC---------UUGUagcCGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 66024 0.68 0.571767
Target:  5'- -gGGCCGc-ACGUguugCGcGCGAGCUCGACg -3'
miRNA:   3'- uaCUGGCcuUGUA----GC-CGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 18739 0.68 0.582504
Target:  5'- --cAUCGGuaaguCGUCGGUGGuGCUCGACa -3'
miRNA:   3'- uacUGGCCuu---GUAGCCGCU-CGAGCUG- -5'
23504 3' -56 NC_005259.1 + 53407 0.68 0.582504
Target:  5'- -gGACCGGGGCGguUCuGCGuAGCgCGACu -3'
miRNA:   3'- uaCUGGCCUUGU--AGcCGC-UCGaGCUG- -5'
23504 3' -56 NC_005259.1 + 10329 0.68 0.582504
Target:  5'- -gGGCuCGGcGACGggcUCGGCGgcagcgGGCUCGACa -3'
miRNA:   3'- uaCUG-GCC-UUGU---AGCCGC------UCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 11419 0.68 0.593281
Target:  5'- cGUGGCCGGuGCAaCGGgGAuGCUUGGg -3'
miRNA:   3'- -UACUGGCCuUGUaGCCgCU-CGAGCUg -5'
23504 3' -56 NC_005259.1 + 19949 0.68 0.60409
Target:  5'- cGUGugCGuccGCAaCGGCG-GCUCGGCg -3'
miRNA:   3'- -UACugGCcu-UGUaGCCGCuCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 58784 0.68 0.60842
Target:  5'- uGUGcGCCGGucgaggcggugauuGCcUCGGCGGGCUCGcGCu -3'
miRNA:   3'- -UAC-UGGCCu-------------UGuAGCCGCUCGAGC-UG- -5'
23504 3' -56 NC_005259.1 + 26639 0.68 0.625769
Target:  5'- gAUGGCCuGGcguGCGcUCGGCaGGUUCGGCg -3'
miRNA:   3'- -UACUGG-CCu--UGU-AGCCGcUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 12369 0.68 0.625769
Target:  5'- -cGACCGaGGuaGUCGGCGAGagCGGCa -3'
miRNA:   3'- uaCUGGC-CUugUAGCCGCUCgaGCUG- -5'
23504 3' -56 NC_005259.1 + 31794 0.67 0.636622
Target:  5'- uUGACCGcguCGUCauCGAGCUCGACc -3'
miRNA:   3'- uACUGGCcuuGUAGccGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 34174 0.67 0.636622
Target:  5'- aGUG-CCGGAACAcaccgGGCaguGGCUCGGCa -3'
miRNA:   3'- -UACuGGCCUUGUag---CCGc--UCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 36002 0.67 0.636622
Target:  5'- -aGGCCGGAcuGCAcCGagguggccaGCGAGgUCGACa -3'
miRNA:   3'- uaCUGGCCU--UGUaGC---------CGCUCgAGCUG- -5'
23504 3' -56 NC_005259.1 + 61914 0.67 0.636622
Target:  5'- --cGCCGGucguCGUCGGC-AGCUCGGu -3'
miRNA:   3'- uacUGGCCuu--GUAGCCGcUCGAGCUg -5'
23504 3' -56 NC_005259.1 + 63657 0.67 0.658305
Target:  5'- cUGGCCGGGACGcCGGacaccuCGGGCacCGGCg -3'
miRNA:   3'- uACUGGCCUUGUaGCC------GCUCGa-GCUG- -5'
23504 3' -56 NC_005259.1 + 58969 0.67 0.669116
Target:  5'- -aGGUCGGGcagcucgucgGCGaCGGCGAGCUUGGCc -3'
miRNA:   3'- uaCUGGCCU----------UGUaGCCGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 5954 0.66 0.690627
Target:  5'- -cGAgCGGGACuUCuGCGGGC-CGACc -3'
miRNA:   3'- uaCUgGCCUUGuAGcCGCUCGaGCUG- -5'
23504 3' -56 NC_005259.1 + 67788 0.66 0.690627
Target:  5'- gGUGACCuuguuGGcACcgCGuGCGAGCUUGAg -3'
miRNA:   3'- -UACUGG-----CCuUGuaGC-CGCUCGAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.