miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23504 3' -56 NC_005259.1 + 26639 0.68 0.625769
Target:  5'- gAUGGCCuGGcguGCGcUCGGCaGGUUCGGCg -3'
miRNA:   3'- -UACUGG-CCu--UGU-AGCCGcUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 58784 0.68 0.60842
Target:  5'- uGUGcGCCGGucgaggcggugauuGCcUCGGCGGGCUCGcGCu -3'
miRNA:   3'- -UAC-UGGCCu-------------UGuAGCCGCUCGAGC-UG- -5'
23504 3' -56 NC_005259.1 + 19949 0.68 0.60409
Target:  5'- cGUGugCGuccGCAaCGGCG-GCUCGGCg -3'
miRNA:   3'- -UACugGCcu-UGUaGCCGCuCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 11419 0.68 0.593281
Target:  5'- cGUGGCCGGuGCAaCGGgGAuGCUUGGg -3'
miRNA:   3'- -UACUGGCCuUGUaGCCgCU-CGAGCUg -5'
23504 3' -56 NC_005259.1 + 53407 0.68 0.582504
Target:  5'- -gGACCGGGGCGguUCuGCGuAGCgCGACu -3'
miRNA:   3'- uaCUGGCCUUGU--AGcCGC-UCGaGCUG- -5'
23504 3' -56 NC_005259.1 + 18739 0.68 0.582504
Target:  5'- --cAUCGGuaaguCGUCGGUGGuGCUCGACa -3'
miRNA:   3'- uacUGGCCuu---GUAGCCGCU-CGAGCUG- -5'
23504 3' -56 NC_005259.1 + 10329 0.68 0.582504
Target:  5'- -gGGCuCGGcGACGggcUCGGCGgcagcgGGCUCGACa -3'
miRNA:   3'- uaCUG-GCC-UUGU---AGCCGC------UCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 66024 0.68 0.571767
Target:  5'- -gGGCCGc-ACGUguugCGcGCGAGCUCGACg -3'
miRNA:   3'- uaCUGGCcuUGUA----GC-CGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 24226 0.68 0.571767
Target:  5'- cGUGACCGGcggggccgaGGCAc--GCGAGUUCGGCg -3'
miRNA:   3'- -UACUGGCC---------UUGUagcCGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 50424 0.69 0.561078
Target:  5'- uUGACCGGcucgGGCAgCGGUgcGGGCUCGGg -3'
miRNA:   3'- uACUGGCC----UUGUaGCCG--CUCGAGCUg -5'
23504 3' -56 NC_005259.1 + 3297 0.69 0.539873
Target:  5'- --cGCCGGucCcUCGGCGAGCgcugcgUCGACg -3'
miRNA:   3'- uacUGGCCuuGuAGCCGCUCG------AGCUG- -5'
23504 3' -56 NC_005259.1 + 47886 0.69 0.539873
Target:  5'- uUGGCCGGGucaGCGUCGGCucguuGAGCgccUUGAUg -3'
miRNA:   3'- uACUGGCCU---UGUAGCCG-----CUCG---AGCUG- -5'
23504 3' -56 NC_005259.1 + 42550 0.69 0.539873
Target:  5'- gGUGGCgGGcAGC-UCGGCGAGCagccggucgucaUCGAUa -3'
miRNA:   3'- -UACUGgCC-UUGuAGCCGCUCG------------AGCUG- -5'
23504 3' -56 NC_005259.1 + 11569 0.69 0.539873
Target:  5'- uUGAUCGGuAGCAaaaUCGuaGCGGGCUUGGCc -3'
miRNA:   3'- uACUGGCC-UUGU---AGC--CGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 67835 0.7 0.498349
Target:  5'- -cGACCGGcAGCc-CGGUGAGCgggUCGACc -3'
miRNA:   3'- uaCUGGCC-UUGuaGCCGCUCG---AGCUG- -5'
23504 3' -56 NC_005259.1 + 54488 0.7 0.488187
Target:  5'- --cGCCGaGGGuCAUCGGCGGGCauggCGGCg -3'
miRNA:   3'- uacUGGC-CUU-GUAGCCGCUCGa---GCUG- -5'
23504 3' -56 NC_005259.1 + 7627 0.7 0.468164
Target:  5'- -gGGCCGGAccuacacCGUCGcCGAGUUCGACc -3'
miRNA:   3'- uaCUGGCCUu------GUAGCcGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 4130 0.71 0.438946
Target:  5'- cGUGGCCaaGAcCGUCGGCGAGUUCaagGACg -3'
miRNA:   3'- -UACUGGc-CUuGUAGCCGCUCGAG---CUG- -5'
23504 3' -56 NC_005259.1 + 9355 0.71 0.43799
Target:  5'- gAUGACCgucuguaGGucguAC-UCGGCGAGCUCGGa -3'
miRNA:   3'- -UACUGG-------CCu---UGuAGCCGCUCGAGCUg -5'
23504 3' -56 NC_005259.1 + 27385 0.71 0.42944
Target:  5'- gGUGACCGGcggcggugucGGCAgCGGCGgcAGCUCGGu -3'
miRNA:   3'- -UACUGGCC----------UUGUaGCCGC--UCGAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.