Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23504 | 3' | -56 | NC_005259.1 | + | 5954 | 0.66 | 0.690627 |
Target: 5'- -cGAgCGGGACuUCuGCGGGC-CGACc -3' miRNA: 3'- uaCUgGCCUUGuAGcCGCUCGaGCUG- -5' |
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23504 | 3' | -56 | NC_005259.1 | + | 9564 | 0.66 | 0.701306 |
Target: 5'- -cGACC---GCGUCGGCGAgguGCUCGuCa -3' miRNA: 3'- uaCUGGccuUGUAGCCGCU---CGAGCuG- -5' |
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23504 | 3' | -56 | NC_005259.1 | + | 40884 | 0.66 | 0.711919 |
Target: 5'- --cACCGGccACcgUGGCGGGgUCGGCa -3' miRNA: 3'- uacUGGCCu-UGuaGCCGCUCgAGCUG- -5' |
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23504 | 3' | -56 | NC_005259.1 | + | 8973 | 0.66 | 0.711919 |
Target: 5'- cGUG-CCGGGACGUaGGUGccAGCggCGACg -3' miRNA: 3'- -UACuGGCCUUGUAgCCGC--UCGa-GCUG- -5' |
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23504 | 3' | -56 | NC_005259.1 | + | 48473 | 0.66 | 0.711919 |
Target: 5'- --cGCCGGGucGCGUCGGCcuguucCUCGACg -3' miRNA: 3'- uacUGGCCU--UGUAGCCGcuc---GAGCUG- -5' |
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23504 | 3' | -56 | NC_005259.1 | + | 8770 | 0.66 | 0.722456 |
Target: 5'- uUGGCCaGcGCggCGGUgauGAGCUCGGCc -3' miRNA: 3'- uACUGGcCuUGuaGCCG---CUCGAGCUG- -5' |
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23504 | 3' | -56 | NC_005259.1 | + | 56308 | 0.66 | 0.722456 |
Target: 5'- cGUGGCCGGAcccuCGUCGccguCGAGCaaucCGACu -3' miRNA: 3'- -UACUGGCCUu---GUAGCc---GCUCGa---GCUG- -5' |
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23504 | 3' | -56 | NC_005259.1 | + | 43578 | 0.66 | 0.732905 |
Target: 5'- gAUGACCuuGAGCAgcacUCGGaCGAGCaagUUGACg -3' miRNA: 3'- -UACUGGc-CUUGU----AGCC-GCUCG---AGCUG- -5' |
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23504 | 3' | -56 | NC_005259.1 | + | 24474 | 0.66 | 0.737058 |
Target: 5'- -cGACCGGAgaGCucguccUCGGCGAugucaagaccaccaaGgUCGACa -3' miRNA: 3'- uaCUGGCCU--UGu-----AGCCGCU---------------CgAGCUG- -5' |
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23504 | 3' | -56 | NC_005259.1 | + | 50282 | 0.66 | 0.743257 |
Target: 5'- gGUGGCgGGAACGUCGuGCacGCUCuGCc -3' miRNA: 3'- -UACUGgCCUUGUAGC-CGcuCGAGcUG- -5' |
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23504 | 3' | -56 | NC_005259.1 | + | 60072 | 0.66 | 0.747367 |
Target: 5'- -aGGCuCGGGcgGC-UCgccgacuuucucgauGGCGAGCUCGACc -3' miRNA: 3'- uaCUG-GCCU--UGuAG---------------CCGCUCGAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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