Results 1 - 20 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 9554 | 0.66 | 0.426187 |
Target: 5'- uGCCCGGCCucgACcGCgUCGgcgaggUGCUCGUCAa -3' miRNA: 3'- -CGGGCUGG---UGuCGgAGC------ACGGGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 18420 | 0.71 | 0.19493 |
Target: 5'- cGCCCG-CCACcuacgcgcacgacGCCUCGUGCaacaccgcgcacaCCGCCGg -3' miRNA: 3'- -CGGGCuGGUGu------------CGGAGCACG-------------GGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 8158 | 0.71 | 0.202405 |
Target: 5'- uGCuCUGGCCAUGGCCUgaggcuaccccCGUgGCCUGCCGu -3' miRNA: 3'- -CG-GGCUGGUGUCGGA-----------GCA-CGGGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 9130 | 0.7 | 0.212757 |
Target: 5'- cCCCGGUacggGCAGCCgugcUCGUGCCCGUCGa -3' miRNA: 3'- cGGGCUGg---UGUCGG----AGCACGGGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 9071 | 0.7 | 0.218102 |
Target: 5'- gGUCaUGGCCACAGCauaggccCGuUGCCCGCCGa -3' miRNA: 3'- -CGG-GCUGGUGUCGga-----GC-ACGGGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 56242 | 0.7 | 0.218102 |
Target: 5'- -gCCGACCACguugggaucggcGGCCUUGaGCgCCGCCGc -3' miRNA: 3'- cgGGCUGGUG------------UCGGAGCaCG-GGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 18502 | 0.7 | 0.223561 |
Target: 5'- cGCCgaCGACCuCAGCgaUC-UGCCCGCCGa -3' miRNA: 3'- -CGG--GCUGGuGUCGg-AGcACGGGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 30185 | 0.7 | 0.223561 |
Target: 5'- cGCCCG--CACAGCaCUaccccgucgGUGCCCGCCGc -3' miRNA: 3'- -CGGGCugGUGUCG-GAg--------CACGGGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 9779 | 0.7 | 0.234828 |
Target: 5'- gGCUCGACUuCuGCCcggUGUGCCCGCUc -3' miRNA: 3'- -CGGGCUGGuGuCGGa--GCACGGGCGGu -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 60106 | 0.71 | 0.193952 |
Target: 5'- aGCUCGACCagcgacucgauaucgGCGGCCUCGUccugcgcggccuuGgCCGCCGc -3' miRNA: 3'- -CGGGCUGG---------------UGUCGGAGCA-------------CgGGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 4360 | 0.71 | 0.183009 |
Target: 5'- cGCCgGACgGCAcGCC-CGUGCCCugcucaucGCCAa -3' miRNA: 3'- -CGGgCUGgUGU-CGGaGCACGGG--------CGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 54841 | 0.72 | 0.156999 |
Target: 5'- aGCCCGACCGUAGCaguagGCCCGCUg -3' miRNA: 3'- -CGGGCUGGUGUCGgagcaCGGGCGGu -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 32304 | 0.76 | 0.083369 |
Target: 5'- gGCCCaGAgcCUugAGCCgcaGUGCCCGCCAa -3' miRNA: 3'- -CGGG-CU--GGugUCGGag-CACGGGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 8845 | 0.75 | 0.106027 |
Target: 5'- uGCgCCGACCACcacagCGUGCCCGCCGc -3' miRNA: 3'- -CG-GGCUGGUGucggaGCACGGGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 46905 | 0.75 | 0.106027 |
Target: 5'- cGCCCG-CCgaGCAGUCcgCGUGCgCCGCCGa -3' miRNA: 3'- -CGGGCuGG--UGUCGGa-GCACG-GGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 49675 | 0.74 | 0.124226 |
Target: 5'- uGCUCGGCCugguaguCGGCCUCGcGCUCGCUg -3' miRNA: 3'- -CGGGCUGGu------GUCGGAGCaCGGGCGGu -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 64752 | 0.74 | 0.126529 |
Target: 5'- cGCCC-ACCGCGccucgcgacggugcGCCUCGgcgGCCCGCUg -3' miRNA: 3'- -CGGGcUGGUGU--------------CGGAGCa--CGGGCGGu -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 68240 | 0.74 | 0.127528 |
Target: 5'- gGCCUgcucaaggauGACCGCAGCCUUGcGCUCGUCGu -3' miRNA: 3'- -CGGG----------CUGGUGUCGGAGCaCGGGCGGU- -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 56908 | 0.73 | 0.137927 |
Target: 5'- uGgCCG-CCGCAGCaggCGUGCCCGCg- -3' miRNA: 3'- -CgGGCuGGUGUCGga-GCACGGGCGgu -5' |
|||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 3540 | 0.72 | 0.156999 |
Target: 5'- -aCCGACCACAGCCagauccgCGaGCuuGCCGa -3' miRNA: 3'- cgGGCUGGUGUCGGa------GCaCGggCGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home