miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23506 3' -62.6 NC_005259.1 + 1415 0.66 0.399851
Target:  5'- aCCCGAgCACGGCauacgUCGUGCUCGg-- -3'
miRNA:   3'- cGGGCUgGUGUCGg----AGCACGGGCggu -5'
23506 3' -62.6 NC_005259.1 + 3471 0.67 0.342602
Target:  5'- uGCCUcaccuccgagGACCACAcccuGCCUCacgcgaccauGUGCgCCGCCGc -3'
miRNA:   3'- -CGGG----------CUGGUGU----CGGAG----------CACG-GGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 3540 0.72 0.156999
Target:  5'- -aCCGACCACAGCCagauccgCGaGCuuGCCGa -3'
miRNA:   3'- cgGGCUGGUGUCGGa------GCaCGggCGGU- -5'
23506 3' -62.6 NC_005259.1 + 4319 0.67 0.334922
Target:  5'- aGCgCGACCAa--CCUCGUGCCgGaCCu -3'
miRNA:   3'- -CGgGCUGGUgucGGAGCACGGgC-GGu -5'
23506 3' -62.6 NC_005259.1 + 4360 0.71 0.183009
Target:  5'- cGCCgGACgGCAcGCC-CGUGCCCugcucaucGCCAa -3'
miRNA:   3'- -CGGgCUGgUGU-CGGaGCACGGG--------CGGU- -5'
23506 3' -62.6 NC_005259.1 + 7650 0.68 0.319942
Target:  5'- aGUUCGACCGCcGUCgUCGUGagcgcCCCGCCu -3'
miRNA:   3'- -CGGGCUGGUGuCGG-AGCAC-----GGGCGGu -5'
23506 3' -62.6 NC_005259.1 + 8158 0.71 0.202405
Target:  5'- uGCuCUGGCCAUGGCCUgaggcuaccccCGUgGCCUGCCGu -3'
miRNA:   3'- -CG-GGCUGGUGUCGGA-----------GCA-CGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 8367 0.69 0.278045
Target:  5'- cGCUCGGCgGCGGCCUCG-GCaUCGgCGa -3'
miRNA:   3'- -CGGGCUGgUGUCGGAGCaCG-GGCgGU- -5'
23506 3' -62.6 NC_005259.1 + 8845 0.75 0.106027
Target:  5'- uGCgCCGACCACcacagCGUGCCCGCCGc -3'
miRNA:   3'- -CG-GGCUGGUGucggaGCACGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 9071 0.7 0.218102
Target:  5'- gGUCaUGGCCACAGCauaggccCGuUGCCCGCCGa -3'
miRNA:   3'- -CGG-GCUGGUGUCGga-----GC-ACGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 9130 0.7 0.212757
Target:  5'- cCCCGGUacggGCAGCCgugcUCGUGCCCGUCGa -3'
miRNA:   3'- cGGGCUGg---UGUCGG----AGCACGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 9554 0.66 0.426187
Target:  5'- uGCCCGGCCucgACcGCgUCGgcgaggUGCUCGUCAa -3'
miRNA:   3'- -CGGGCUGG---UGuCGgAGC------ACGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 9779 0.7 0.234828
Target:  5'- gGCUCGACUuCuGCCcggUGUGCCCGCUc -3'
miRNA:   3'- -CGGGCUGGuGuCGGa--GCACGGGCGGu -5'
23506 3' -62.6 NC_005259.1 + 9968 0.68 0.30547
Target:  5'- cGCCCGACCACcGCaccggUCGaggugGCCaGCCGg -3'
miRNA:   3'- -CGGGCUGGUGuCGg----AGCa----CGGgCGGU- -5'
23506 3' -62.6 NC_005259.1 + 10121 0.66 0.382881
Target:  5'- -aCCGugCGCaucAGCCcacgcgCGcGCCCGCCGu -3'
miRNA:   3'- cgGGCugGUG---UCGGa-----GCaCGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 12546 0.68 0.30547
Target:  5'- aGCCCcACgGCAuuGCCggGgugGCCCGCCAg -3'
miRNA:   3'- -CGGGcUGgUGU--CGGagCa--CGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 13023 0.68 0.312642
Target:  5'- cGCCCGGCCcCAGCacgccaacacgUUCG-GCCCGUUc -3'
miRNA:   3'- -CGGGCUGGuGUCG-----------GAGCaCGGGCGGu -5'
23506 3' -62.6 NC_005259.1 + 14320 0.69 0.284712
Target:  5'- cGCCCucgacGCCGCcGCCcgCGUGCgggCCGCCGa -3'
miRNA:   3'- -CGGGc----UGGUGuCGGa-GCACG---GGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 14486 0.69 0.278045
Target:  5'- gGUCCGAuCCGCuGCUcgGUGCCCGCa- -3'
miRNA:   3'- -CGGGCU-GGUGuCGGagCACGGGCGgu -5'
23506 3' -62.6 NC_005259.1 + 18420 0.71 0.19493
Target:  5'- cGCCCG-CCACcuacgcgcacgacGCCUCGUGCaacaccgcgcacaCCGCCGg -3'
miRNA:   3'- -CGGGCuGGUGu------------CGGAGCACG-------------GGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.