miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23506 3' -62.6 NC_005259.1 + 18502 0.7 0.223561
Target:  5'- cGCCgaCGACCuCAGCgaUC-UGCCCGCCGa -3'
miRNA:   3'- -CGG--GCUGGuGUCGg-AGcACGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 20137 0.67 0.33416
Target:  5'- uGCCgucgcgaUGACgGCAGCCg-GUGCCCugGCCAc -3'
miRNA:   3'- -CGG-------GCUGgUGUCGGagCACGGG--CGGU- -5'
23506 3' -62.6 NC_005259.1 + 22131 0.67 0.342602
Target:  5'- uCCCGcgcaGCCACgucGGCaUCGUGCgCGCCGa -3'
miRNA:   3'- cGGGC----UGGUG---UCGgAGCACGgGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 23615 0.67 0.33416
Target:  5'- cGCgUGGCgGCAGCCagacggcUCGgugugguuucgGCCCGCCGa -3'
miRNA:   3'- -CGgGCUGgUGUCGG-------AGCa----------CGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 23887 0.67 0.374578
Target:  5'- aUCCGcuGCCGCccgAGCCgcCGcGCCCGCCGu -3'
miRNA:   3'- cGGGC--UGGUG---UCGGa-GCaCGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 24835 0.7 0.234828
Target:  5'- cGCaCCGACCaaGCAGUC-CGUGCgcuaCGCCGa -3'
miRNA:   3'- -CG-GGCUGG--UGUCGGaGCACGg---GCGGU- -5'
23506 3' -62.6 NC_005259.1 + 25933 0.69 0.265085
Target:  5'- gGUCCGgugagcgcacGCCGguGCC-CG-GCCCGCCGa -3'
miRNA:   3'- -CGGGC----------UGGUguCGGaGCaCGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 26146 0.67 0.374578
Target:  5'- cGCCgaGGCCgaGCAGCC-CGaaaaUGCCCGCg- -3'
miRNA:   3'- -CGGg-CUGG--UGUCGGaGC----ACGGGCGgu -5'
23506 3' -62.6 NC_005259.1 + 27404 0.67 0.366397
Target:  5'- gGCagCGGCgGCAGCUcgGUGCCCGCgAg -3'
miRNA:   3'- -CGg-GCUGgUGUCGGagCACGGGCGgU- -5'
23506 3' -62.6 NC_005259.1 + 28573 0.67 0.35834
Target:  5'- cCCCG-CCACcGCCUC-UGaCgCCGCCAu -3'
miRNA:   3'- cGGGCuGGUGuCGGAGcAC-G-GGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 29442 0.66 0.426187
Target:  5'- cCUCGGCCuCAGCCagCGUGaCCuUGCCGc -3'
miRNA:   3'- cGGGCUGGuGUCGGa-GCAC-GG-GCGGU- -5'
23506 3' -62.6 NC_005259.1 + 30185 0.7 0.223561
Target:  5'- cGCCCG--CACAGCaCUaccccgucgGUGCCCGCCGc -3'
miRNA:   3'- -CGGGCugGUGUCG-GAg--------CACGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 30465 0.68 0.327368
Target:  5'- uGCUCGAUCaaGCAGCCUCGagGUagGCCAg -3'
miRNA:   3'- -CGGGCUGG--UGUCGGAGCa-CGggCGGU- -5'
23506 3' -62.6 NC_005259.1 + 32304 0.76 0.083369
Target:  5'- gGCCCaGAgcCUugAGCCgcaGUGCCCGCCAa -3'
miRNA:   3'- -CGGG-CU--GGugUCGGag-CACGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 34063 0.66 0.391306
Target:  5'- uGUCCGACCACGGCggCGgUGUCCacacguagGCCc -3'
miRNA:   3'- -CGGGCUGGUGUCGgaGC-ACGGG--------CGGu -5'
23506 3' -62.6 NC_005259.1 + 36722 0.67 0.35834
Target:  5'- cGCUCGACC-C-GCCgc--GCCCGCCGg -3'
miRNA:   3'- -CGGGCUGGuGuCGGagcaCGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 36958 0.66 0.399851
Target:  5'- uGCCCgcgaGACC---GCCUCG-GCCCGCa- -3'
miRNA:   3'- -CGGG----CUGGuguCGGAGCaCGGGCGgu -5'
23506 3' -62.6 NC_005259.1 + 37279 0.7 0.234828
Target:  5'- cGCCCGGCaggacuugCAUGGCg--GUGCCCGCCGg -3'
miRNA:   3'- -CGGGCUG--------GUGUCGgagCACGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 37397 0.66 0.390458
Target:  5'- cGCgCCGcCCAUGGUgUUGUugacgccGCCCGCCGu -3'
miRNA:   3'- -CG-GGCuGGUGUCGgAGCA-------CGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 40697 0.66 0.391306
Target:  5'- gGCCCGAUgAuCGGg---GUGCCCGCCAc -3'
miRNA:   3'- -CGGGCUGgU-GUCggagCACGGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.